Literature DB >> 15197605

Thermophilic bacterial DNA polymerases with reverse-transcriptase activity.

Harini Shandilya1, Kate Griffiths, Elizabeth K Flynn, Mekbib Astatke, Po-Jen Shih, Jun E Lee, Gary F Gerard, Moreland D Gibbs, Peter L Bergquist.   

Abstract

Conserved motifs found in known bacterial polI DNA polymerase sequences were identified, and degenerate PCR primers were designed for PCR amplification of an internal portion of polI genes from all bacterial divisions. We describe here a method that has allowed the rapid identification and isolation of 13 polI genes from a diverse selection of thermophilic bacteria and report on the biochemical characteristics of nine of the purified recombinant enzymes. Several enzymes showed significant reverse-transcriptase activity in the presence of Mg2+, particularly the polymerases from Bacillus caldolyticus EA1, Caldibacillus cellovorans CompA.2, and Clostridium stercorarium. Copyright 2004 Springer-Verlag

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Year:  2004        PMID: 15197605     DOI: 10.1007/s00792-004-0384-5

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  19 in total

1.  Randomization of genes by PCR mutagenesis.

Authors:  R C Cadwell; G F Joyce
Journal:  PCR Methods Appl       Date:  1992-08

2.  Reverse transcription and DNA amplification by a Thermus thermophilus DNA polymerase.

Authors:  T W Myers; D H Gelfand
Journal:  Biochemistry       Date:  1991-08-06       Impact factor: 3.162

3.  Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR.

Authors:  D G McDowell; N A Burns; H C Parkes
Journal:  Nucleic Acids Res       Date:  1998-07-15       Impact factor: 16.971

4.  Cloning of the xynB gene from Dictyoglomus thermophilum Rt46B.1 and action of the gene product on kraft pulp.

Authors:  D D Morris; M D Gibbs; C W Chin; M H Koh; K K Wong; R W Allison; P J Nelson; P L Bergquist
Journal:  Appl Environ Microbiol       Date:  1998-05       Impact factor: 4.792

5.  Second-strand cDNA synthesis with E. coli DNA polymerase I and RNase H: the fate of information at the mRNA 5' terminus and the effect of E. coli DNA ligase.

Authors:  J M D'Alessio; G F Gerard
Journal:  Nucleic Acids Res       Date:  1988-03-25       Impact factor: 16.971

6.  Identification of residues critical for the polymerase activity of the Klenow fragment of DNA polymerase I from Escherichia coli.

Authors:  A H Polesky; T A Steitz; N D Grindley; C M Joyce
Journal:  J Biol Chem       Date:  1990-08-25       Impact factor: 5.157

7.  Polymerization and RNase H activities of the reverse transcriptases from avian myeloblastosis, human immunodeficiency, and Moloney murine leukemia viruses are functionally uncoupled.

Authors:  J J DeStefano; R G Buiser; L M Mallaber; T W Myers; R A Bambara; P J Fay
Journal:  J Biol Chem       Date:  1991-04-25       Impact factor: 5.157

8.  Mutant Thermotoga neapolitana DNA polymerase I: altered catalytic properties for non-templated nucleotide addition and incorporation of correct nucleotides.

Authors:  Shu-Wei Yang; Mekbib Astatke; Jason Potter; Deb K Chatterjee
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

9.  Pausing of reverse transcriptase on retroviral RNA templates is influenced by secondary structures both 5' and 3' of the catalytic site.

Authors:  G P Harrison; M S Mayo; E Hunter; A M Lever
Journal:  Nucleic Acids Res       Date:  1998-07-15       Impact factor: 16.971

10.  Human immunodeficiency virus type 1 nucleocapsid protein reduces reverse transcriptase pausing at a secondary structure near the murine leukemia virus polypurine tract.

Authors:  W Wu; L E Henderson; T D Copeland; R J Gorelick; W J Bosche; A Rein; J G Levin
Journal:  J Virol       Date:  1996-10       Impact factor: 5.103

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  7 in total

1.  Reverse transcriptase at bacterial telomeres.

Authors:  Neal F Lue; Sulin Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-28       Impact factor: 11.205

2.  Molecular diversity and catalytic activity of Thermus DNA polymerases.

Authors:  Moreland D Gibbs; Rosalind A Reeves; David Mandelman; Qingli Mi; Jun Lee; Peter L Bergquist
Journal:  Extremophiles       Date:  2009-07-12       Impact factor: 2.395

Review 3.  Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea.

Authors:  Digvijay Verma; Vinay Kumar; Tulasi Satyanarayana
Journal:  World J Microbiol Biotechnol       Date:  2022-06-13       Impact factor: 3.312

4.  The Complete Genome Sequence of Hyperthermophile Dictyoglomus turgidum DSM 6724™ Reveals a Specialized Carbohydrate Fermentor.

Authors:  Phillip J Brumm; Krishne Gowda; Frank T Robb; David A Mead
Journal:  Front Microbiol       Date:  2016-12-20       Impact factor: 5.640

5.  Novel mutations in Moloney Murine Leukemia Virus reverse transcriptase increase thermostability through tighter binding to template-primer.

Authors:  Bahram Arezi; Holly Hogrefe
Journal:  Nucleic Acids Res       Date:  2008-12-04       Impact factor: 16.971

6.  A bacterial pioneer produces cellulase complexes that persist through community succession.

Authors:  Sebastian Kolinko; Yu-Wei Wu; Firehiwot Tachea; Evelyn Denzel; Jennifer Hiras; Raphael Gabriel; Nora Bäcker; Leanne Jade G Chan; Stephanie A Eichorst; Dario Frey; Qiushi Chen; Parastoo Azadi; Paul D Adams; Todd R Pray; Deepti Tanjore; Christopher J Petzold; John M Gladden; Blake A Simmons; Steven W Singer
Journal:  Nat Microbiol       Date:  2017-11-06       Impact factor: 17.745

Review 7.  Alteration of enzymes and their application to nucleic acid amplification (Review).

Authors:  Kiyoshi Yasukawa; Itaru Yanagihara; Shinsuke Fujiwara
Journal:  Int J Mol Med       Date:  2020-09-15       Impact factor: 4.101

  7 in total

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