Literature DB >> 15193312

Computational exploration of structural information from cryo-electron tomograms.

Achilleas S Frangakis1, Friedrich Förster.   

Abstract

Cryo-electron tomography aims to act as an interface between in vivo cell imaging and techniques achieving atomic resolution. This attempt to bridge the resolution gap is facilitated by recent software and hardware advances. Information provided by atomically resolved macromolecules and molecular interaction data need to be put into a common framework in order to create a hybrid multidimensional cellular image. A major partner in this enterprise is the development of regularization and pattern recognition techniques, which try to identify macromolecular complexes as a function of their structural signature in cryo-electron tomograms of living cells.

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Year:  2004        PMID: 15193312     DOI: 10.1016/j.sbi.2004.04.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  14 in total

Review 1.  Bridging the imaging gap: visualizing subcellular architecture with electron tomography.

Authors:  Sriram Subramaniam
Journal:  Curr Opin Microbiol       Date:  2005-06       Impact factor: 7.934

2.  Segmentation of electron tomographic data sets using fuzzy set theory principles.

Authors:  Edgar Garduño; Mona Wong-Barnum; Niels Volkmann; Mark H Ellisman
Journal:  J Struct Biol       Date:  2008-02-16       Impact factor: 2.867

3.  Evaluation of denoising algorithms for biological electron tomography.

Authors:  Rajesh Narasimha; Iman Aganj; Adam E Bennett; Mario J Borgnia; Daniel Zabransky; Guillermo Sapiro; Steven W McLaughlin; Jacqueline L S Milne; Sriram Subramaniam
Journal:  J Struct Biol       Date:  2008-04-22       Impact factor: 2.867

4.  High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching.

Authors:  Min Xu; Martin Beck; Frank Alber
Journal:  J Struct Biol       Date:  2012-03-07       Impact factor: 2.867

5.  Automated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs.

Authors:  Mirabela Rusu; Zbigniew Starosolski; Manuel Wahle; Alexander Rigort; Willy Wriggers
Journal:  J Struct Biol       Date:  2012-03-13       Impact factor: 2.867

6.  Efficient Extraction of Macromolecular Complexes from Electron Tomograms Based on Reduced Representation Templates.

Authors:  Xiao-Ping Xu; Christopher Page; Niels Volkmann
Journal:  Comput Anal Images Patterns       Date:  2015-08-25

7.  Developing a denoising filter for electron microscopy and tomography data in the cloud.

Authors:  Zbigniew Starosolski; Marek Szczepanski; Manuel Wahle; Mirabela Rusu; Willy Wriggers
Journal:  Biophys Rev       Date:  2012-09-01

8.  Quantifying Variability of Manual Annotation in Cryo-Electron Tomograms.

Authors:  Corey W Hecksel; Michele C Darrow; Wei Dai; Jesús G Galaz-Montoya; Jessica A Chin; Patrick G Mitchell; Shurui Chen; Jemba Jakana; Michael F Schmid; Wah Chiu
Journal:  Microsc Microanal       Date:  2016-05-26       Impact factor: 4.127

9.  Conformational States of macromolecular assemblies explored by integrative structure calculation.

Authors:  Konstantinos Thalassinos; Arun Prasad Pandurangan; Min Xu; Frank Alber; Maya Topf
Journal:  Structure       Date:  2013-09-03       Impact factor: 5.006

Review 10.  Electron cryotomography: a new view into microbial ultrastructure.

Authors:  Zhuo Li; Grant J Jensen
Journal:  Curr Opin Microbiol       Date:  2009-05-06       Impact factor: 7.934

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