Literature DB >> 15181177

Demonstration of a universal surface DNA computer.

Xingping Su1, Lloyd M Smith.   

Abstract

A fundamental concept in computer science is that of the universal Turing machine, which is an abstract definition of a general purpose computer. A general purpose (universal) computer is defined as one which can compute anything that is computable. It has been shown that any computer which is able to simulate Boolean logic circuits of any complexity is such a general purpose computer. The field of DNA computing was founded in 1994 by Adleman's solution of a 7-bit instance of the Hamiltonian path problem. This work, as well as most of the subsequent experimental and theoretical investigations in the area, focused primarily upon the solution of NP-complete problems, which are a subset of the larger universal class of problems. In the present work a surface DNA computer capable of simulating Boolean logic circuits is demonstrated. This was done by constructing NOR and OR gates and combining them into a simple logic circuit. The NOR gate is one of the universal gates in Boolean logic, meaning that any other logic gate can be built from it alone. The circuit was solved using DNA-based operations, demonstrating the universal nature of this surface DNA computing model.

Mesh:

Substances:

Year:  2004        PMID: 15181177      PMCID: PMC434441          DOI: 10.1093/nar/gkh635

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

1.  Molecular computation by DNA hairpin formation.

Authors:  K Sakamoto; H Gouzu; K Komiya; D Kiga; S Yokoyama; T Yokomori; M Hagiya
Journal:  Science       Date:  2000-05-19       Impact factor: 47.728

2.  Molecular computation: RNA solutions to chess problems.

Authors:  D Faulhammer; A R Cukras; R J Lipton; L F Landweber
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

3.  DNA computing on surfaces.

Authors:  Q Liu; L Wang; A G Frutos; A E Condon; R M Corn; L M Smith
Journal:  Nature       Date:  2000-01-13       Impact factor: 49.962

4.  Solution of a 20-variable 3-SAT problem on a DNA computer.

Authors:  Ravinderjit S Braich; Nickolas Chelyapov; Cliff Johnson; Paul W K Rothemund; Leonard Adleman
Journal:  Science       Date:  2002-03-14       Impact factor: 47.728

Review 5.  LNA: a versatile tool for therapeutics and genomics.

Authors:  Michael Petersen; Jesper Wengel
Journal:  Trends Biotechnol       Date:  2003-02       Impact factor: 19.536

6.  Surface amplification of invasive cleavage products.

Authors:  Yan Chen; Michael R Shortreed; Dora Peelen; Manchun Lu; Lloyd M Smith
Journal:  J Am Chem Soc       Date:  2004-03-17       Impact factor: 15.419

7.  Strong positional preference in the interaction of LNA oligonucleotides with DNA polymerase and proofreading exonuclease activities: implications for genotyping assays.

Authors:  Daniel A Di Giusto; Garry C King
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

8.  Algorithmic Self-Assembly of DNA: Theoretical Motivations and 2D Assembly Experiments.

Authors:  E Winfree
Journal:  J Biomol Struct Dyn       Date:  2000

9.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

10.  Programmable and autonomous computing machine made of biomolecules.

Authors:  Y Benenson; T Paz-Elizur; R Adar; E Keinan; Z Livneh; E Shapiro
Journal:  Nature       Date:  2001-11-22       Impact factor: 49.962

View more
  3 in total

1.  A thermodynamic approach to designing structure-free combinatorial DNA word sets.

Authors:  Michael R Shortreed; Seo Bong Chang; DongGee Hong; Maggie Phillips; Bridget Campion; Dan C Tulpan; Mirela Andronescu; Anne Condon; Holger H Hoos; Lloyd M Smith
Journal:  Nucleic Acids Res       Date:  2005-09-02       Impact factor: 16.971

2.  A modular DNA signal translator for the controlled release of a protein by an aptamer.

Authors:  Stefan Beyer; Friedrich C Simmel
Journal:  Nucleic Acids Res       Date:  2006-03-17       Impact factor: 16.971

3.  DNA multi-bit non-volatile memory and bit-shifting operations using addressable electrode arrays and electric field-induced hybridization.

Authors:  Youngjun Song; Sejung Kim; Michael J Heller; Xiaohua Huang
Journal:  Nat Commun       Date:  2018-01-18       Impact factor: 14.919

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.