Literature DB >> 15174126

The Phosphorylation Site Database: A guide to the serine-, threonine-, and/or tyrosine-phosphorylated proteins in prokaryotic organisms.

Susannah M Wurgler-Murphy1, Douglas M King, Peter J Kennelly.   

Abstract

The Phosphorylation Site Database [http://vigen.biochem.vt.edu/xpd/xpd.htm] provides ready access to information from the primary scientific literature concerning those proteins from prokaryotic organisms, i.e., the members of the domains Archaea and Bacteria, that have been reported to undergo covalent phosphorylation on the hydroxyl side chains of serine, threonine, and/or tyrosine residues. Where known, the sequence of the site(s) of phosphorylation and the functional consequences of phosphorylation also are included. Active links enable users to quickly access further information concerning the phosphoprotein of interest from PubMed, GenBank, SWISS-PROT, and PIR.

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Year:  2004        PMID: 15174126     DOI: 10.1002/pmic.200300711

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  16 in total

Review 1.  Posttranslational protein modification in Archaea.

Authors:  Jerry Eichler; Michael W W Adams
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

2.  Mapping Biological Networks from Quantitative Data-Independent Acquisition Mass Spectrometry: Data to Knowledge Pipelines.

Authors:  Erin L Crowgey; Andrea Matlock; Vidya Venkatraman; Justyna Fert-Bober; Jennifer E Van Eyk
Journal:  Methods Mol Biol       Date:  2017

Review 3.  Post-translation modification in Archaea: lessons from Haloferax volcanii and other haloarchaea.

Authors:  Jerry Eichler; Julie Maupin-Furlow
Journal:  FEMS Microbiol Rev       Date:  2012-12-20       Impact factor: 16.408

4.  PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae.

Authors:  Chris Stark; Ting-Cheng Su; Ashton Breitkreutz; Pedro Lourenco; Matthew Dahabieh; Bobby-Joe Breitkreutz; Mike Tyers; Ivan Sadowski
Journal:  Database (Oxford)       Date:  2010-01-28       Impact factor: 3.451

5.  Survey of phosphorylation near drug binding sites in the Protein Data Bank (PDB) and their effects.

Authors:  Kyle P Smith; Kathleen M Gifford; Joshua S Waitzman; Sarah E Rice
Journal:  Proteins       Date:  2014-11-18

6.  RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans.

Authors:  Tzong-Yi Lee; Justin Bo-Kai Hsu; Wen-Chi Chang; Hsien-Da Huang
Journal:  Nucleic Acids Res       Date:  2010-10-30       Impact factor: 16.971

7.  Charge environments around phosphorylation sites in proteins.

Authors:  James Kitchen; Rebecca E Saunders; Jim Warwicker
Journal:  BMC Struct Biol       Date:  2008-03-25

8.  A comprehensive resource for integrating and displaying protein post-translational modifications.

Authors:  Tzong-Yi Lee; Justin Bo-Kai Hsu; Wen-Chi Chang; Ting-Yuan Wang; Po-Chiang Hsu; Hsien-Da Huang
Journal:  BMC Res Notes       Date:  2009-06-23

9.  DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.

Authors:  Cheng-Tsung Lu; Kai-Yao Huang; Min-Gang Su; Tzong-Yi Lee; Neil Arvin Bretaña; Wen-Chi Chang; Yi-Ju Chen; Yu-Ju Chen; Hsien-Da Huang
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

10.  Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life.

Authors:  Michalis Aivaliotis; Boris Macek; Florian Gnad; Peter Reichelt; Matthias Mann; Dieter Oesterhelt
Journal:  PLoS One       Date:  2009-03-10       Impact factor: 3.240

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