Literature DB >> 15173173

Hydration and packing effects on prion folding and beta-sheet conversion. High pressure spectroscopy and pressure perturbation calorimetry studies.

Yraima Cordeiro1, Julia Kraineva, Revanur Ravindra, Luís Maurício T R Lima, Mariana P B Gomes, Debora Foguel, Roland Winter, Jerson L Silva.   

Abstract

The main hypothesis for prion diseases proposes that the cellular protein (PrP(C)) can be altered into a misfolded, beta-sheet-rich isoform (PrP(Sc)), which undergoes aggregation and triggers the onset of transmissible spongiform encephalopathies. Here, we compare the stability against pressure and the thermomechanical properties of the alpha-helical and beta-sheet conformations of recombinant murine prion protein, designated as alpha-rPrP and beta-rPrP, respectively. High temperature induces aggregates and a large gain in intermolecular antiparallel beta-sheet (beta-rPrP), a conformation that shares structural similarity with PrP(Sc). alpha-rPrP is highly stable, and only pressures above 5 kilobars (1 kilobar = 100 MegaPascals) cause reversible denaturation, a process that leads to a random and turnrich conformation with concomitant loss of alpha-helix, as measured by Fourier transform infrared spectroscopy. In contrast, aggregates of beta-rPrP are very sensitive to pressure, undergoing transition into a dissociated species that differs from the denatured form derived from alpha-rPrP. The higher susceptibility to pressure of beta-rPrP can be explained by its less hydrated structure. Pressure perturbation calorimetry supports the view that the accessible surface area of alpha-rPrP is much higher than that of beta-rPrP, which explains the lower degree of hydration of beta-rPrP. Our findings shed new light on the mechanism of prion conversion and show how water plays a prominent role. Our results allow us to propose a volume and free energy diagram of the different species involved in the conversion and aggregation. The existence of different folded conformations as well as different denatured states of PrP may explain the elusive character of its conversion into a pathogenic form.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15173173     DOI: 10.1074/jbc.M404295200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  25 in total

1.  Reversible aggregation plays a crucial role on the folding landscape of p53 core domain.

Authors:  Daniella Ishimaru; Luis M T R Lima; Lenize F Maia; Priscila M Lopez; Ana P Ano Bom; Ana P Valente; Jerson L Silva
Journal:  Biophys J       Date:  2004-08-06       Impact factor: 4.033

2.  Pressure perturbation and differential scanning calorimetric studies of bipolar tetraether liposomes derived from the thermoacidophilic archaeon Sulfolobus acidocaldarius.

Authors:  Parkson Lee-Gau Chong; Revanur Ravindra; Monika Khurana; Verrica English; Roland Winter
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

3.  Structural and hydration properties of the partially unfolded states of the prion protein.

Authors:  Alfonso De Simone; Adriana Zagari; Philippe Derreumaux
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

Review 4.  The peculiar interaction between mammalian prion protein and RNA.

Authors:  Mariana P B Gomes; Yraima Cordeiro; Jerson L Silva
Journal:  Prion       Date:  2008-04-11       Impact factor: 3.931

Review 5.  Amyloid β Protein and Alzheimer's Disease: When Computer Simulations Complement Experimental Studies.

Authors:  Jessica Nasica-Labouze; Phuong H Nguyen; Fabio Sterpone; Olivia Berthoumieu; Nicolae-Viorel Buchete; Sébastien Coté; Alfonso De Simone; Andrew J Doig; Peter Faller; Angel Garcia; Alessandro Laio; Mai Suan Li; Simone Melchionna; Normand Mousseau; Yuguang Mu; Anant Paravastu; Samuela Pasquali; David J Rosenman; Birgit Strodel; Bogdan Tarus; John H Viles; Tong Zhang; Chunyu Wang; Philippe Derreumaux
Journal:  Chem Rev       Date:  2015-03-19       Impact factor: 60.622

6.  The amino-terminal PrP domain is crucial to modulate prion misfolding and aggregation.

Authors:  Yraima Cordeiro; Julia Kraineva; Mariana P B Gomes; Marilene H Lopes; Vilma R Martins; Luís M T R Lima; Débora Foguel; Roland Winter; Jerson L Silva
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

7.  Nonequilibrium all-atom molecular dynamics simulation of the bubble cavitation and application to dissociate amyloid fibrils.

Authors:  Man Hoang Viet; Philippe Derreumaux; Phuong H Nguyen
Journal:  J Chem Phys       Date:  2016-11-07       Impact factor: 3.488

8.  High-efficiency expression of the thermophilic lipase from Geobacillus thermocatenulatus in Escherichia coli and its application in the enzymatic hydrolysis of rapeseed oil.

Authors:  Jun Zhang; Miao Tian; Pengmei Lv; Wen Luo; Zhiyuan Wang; Jingliang Xu; Zhongming Wang
Journal:  3 Biotech       Date:  2020-11-10       Impact factor: 2.406

9.  The p53 core domain is a molten globule at low pH: functional implications of a partially unfolded structure.

Authors:  Ana Paula D Ano Bom; Monica S Freitas; Flavia S Moreira; Danielly Ferraz; Daniel Sanches; Andre M O Gomes; Ana Paula Valente; Yraima Cordeiro; Jerson L Silva
Journal:  J Biol Chem       Date:  2009-11-17       Impact factor: 5.157

Review 10.  Ligand binding and hydration in protein misfolding: insights from studies of prion and p53 tumor suppressor proteins.

Authors:  Jerson L Silva; Tuane C R G Vieira; Mariana P B Gomes; Ana Paula Ano Bom; Luis Mauricio T R Lima; Monica S Freitas; Daniella Ishimaru; Yraima Cordeiro; Debora Foguel
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.