Literature DB >> 15170322

Acid-base equilibria in rhodopsin: dependence of the protonation state of glu134 on its environment.

Xavier Periole1, Marc A Ceruso, Ernest L Mehler.   

Abstract

Glutamic acid E134 in rhodopsin is part of a highly conserved triad, D(E)RY, located near the cytoplasmic lipid/water interface in transmembrane helix 3 of G protein-coupled receptors (GPCRs). A large body of experimental evidence suggests that the protonation of E134 plays a role in the mechanism of activation of rhodopsin and other GPCRs as well. For E134 to change its protonation state, its pK(a) value must shift from values below physiological pH to higher values. Because of the proximity of the triad to the lipid/water interface, it was hypothesized that a change in solvent around E134 from water to lipid could induce such a shift in pK(a). To test this hypothesis, the pK(a) values of the titratable amino acid residues in rhodopsin have been calculated and the change in solvent around E134 was modeled by shifting the position of the lipid/water interface. The approach used to carry out the pK(a) calculations takes into account the partial immersion of transmembrane proteins in lipid. Qualitative experimental evidence is available for several residues regarding their likely protonation state in rhodopsin at or near physiological pH. Comparison of the calculated pK(a) values with these experimental findings shows good agreement between the two. Notably, glutamic acids E122 and E181 were found to be protonated. The pK(a) values were then calculated for a range of lipid/water interface positions. Although the surrounding solvent of several titratable residues changed from water to lipid in this range, leading to pK(a) shifts in most cases, only for E134 would the shift lead to a change in protonation state at physiological pH. Thus, our results show that the protonation state of E134 is particularly sensitive to its environment. This sensitivity together with the location of E134 near the actual position of the lipid/water interface could be a strategic element in the mechanism of activation of rhodopsin.

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Year:  2004        PMID: 15170322     DOI: 10.1021/bi049949e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Proton movement and photointermediate kinetics in rhodopsin mutants.

Authors:  James W Lewis; Istvan Szundi; Manija A Kazmi; Thomas P Sakmar; David S Kliger
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

2.  Putative active states of a prototypic g-protein-coupled receptor from biased molecular dynamics.

Authors:  Davide Provasi; Marta Filizola
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

Review 3.  G protein-coupled receptor rhodopsin.

Authors:  Krzysztof Palczewski
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

4.  Ab initio computational modeling of long loops in G-protein coupled receptors.

Authors:  Sandhya Kortagere; Amitava Roy; Ernest L Mehler
Journal:  J Comput Aided Mol Des       Date:  2006-09-14       Impact factor: 3.686

Review 5.  GPCR activation: protonation and membrane potential.

Authors:  Xuejun C Zhang; Kening Sun; Laixing Zhang; Xuemei Li; Can Cao
Journal:  Protein Cell       Date:  2013-09-20       Impact factor: 14.870

6.  Lipid protein interactions couple protonation to conformation in a conserved cytosolic domain of G protein-coupled receptors.

Authors:  Sineej Madathil; Karim Fahmy
Journal:  J Biol Chem       Date:  2009-08-25       Impact factor: 5.157

7.  A Usual G-Protein-Coupled Receptor in Unusual Membranes.

Authors:  Udeep Chawla; Yunjiang Jiang; Wan Zheng; Liangju Kuang; Suchithranga M D C Perera; Michael C Pitman; Michael F Brown; Hongjun Liang
Journal:  Angew Chem Int Ed Engl       Date:  2015-12-03       Impact factor: 15.336

8.  Deconstructing activation events in rhodopsin.

Authors:  Elena N Laricheva; Karunesh Arora; Jennifer L Knight; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2013-07-22       Impact factor: 15.419

9.  Dynamic models of G-protein coupled receptor dimers: indications of asymmetry in the rhodopsin dimer from molecular dynamics simulations in a POPC bilayer.

Authors:  Marta Filizola; Simon X Wang; Harel Weinstein
Journal:  J Comput Aided Mol Des       Date:  2006-11-07       Impact factor: 3.686

10.  Modeling activated states of GPCRs: the rhodopsin template.

Authors:  Masha Y Niv; Lucy Skrabanek; Marta Filizola; Harel Weinstein
Journal:  J Comput Aided Mol Des       Date:  2006-11-11       Impact factor: 3.686

  10 in total

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