Literature DB >> 15169953

The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA.

Savvas N Savvides1, Srinivasan Raghunathan, Klaus Fütterer, Alex G Kozlov, Timothy M Lohman, Gabriel Waksman.   

Abstract

The crystal structure of full-length homotetrameric single-stranded DNA (ssDNA)-binding protein from Escherichia coli (SSB) has been determined to 3.3 A resolution and reveals that the entire C-terminal domain is disordered even in the presence of ssDNA. To our knowledge, this is the first experimental evidence that the C-terminal domain of SSB may be inherently disordered. The N-terminal DNA-binding domain of the protein is well ordered and is virtually indistinguishable from the previously determined structure of the chymotryptic fragment of SSB (SSBc) in complex with ssDNA. The absence of observable interactions with the core protein and the crystal packing of SSB together suggest that the disordered C-terminal domains likely extend laterally away from the DNA- binding domains, which may facilitate interactions with components of the replication machinery in vivo. The structure also reveals the conservation of molecular contacts between successive tetramers mediated by the L(45) loops as seen in two other crystal forms of SSBc, suggesting a possible functional relevance of this interaction.

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Year:  2004        PMID: 15169953      PMCID: PMC2279931          DOI: 10.1110/ps.04661904

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  31 in total

Review 1.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Structure of the DNA binding domain of E. coli SSB bound to ssDNA.

Authors:  S Raghunathan; A G Kozlov; T M Lohman; G Waksman
Journal:  Nat Struct Biol       Date:  2000-08

3.  Chimeras between single-stranded DNA-binding proteins from Escherichia coli and Mycobacterium tuberculosis reveal that their C-terminal domains interact with uracil DNA glycosylases.

Authors:  P Handa; N Acharya; U Varshney
Journal:  J Biol Chem       Date:  2001-02-27       Impact factor: 5.157

Review 4.  Intrinsically unstructured proteins.

Authors:  Peter Tompa
Journal:  Trends Biochem Sci       Date:  2002-10       Impact factor: 13.807

5.  Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A common step in genetic recombination.

Authors:  Noriko Kantake; Murty V V M Madiraju; Tomohiko Sugiyama; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-18       Impact factor: 11.205

6.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

7.  DNA polymerase III chi subunit ties single-stranded DNA binding protein to the bacterial replication machinery.

Authors:  Gregor Witte; Claus Urbanke; Ute Curth
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

8.  Protein disorder prediction: implications for structural proteomics.

Authors:  Rune Linding; Lars Juhl Jensen; Francesca Diella; Peer Bork; Toby J Gibson; Robert B Russell
Journal:  Structure       Date:  2003-11       Impact factor: 5.006

9.  Crystal structure of the chi:psi sub-assembly of the Escherichia coli DNA polymerase clamp-loader complex.

Authors:  Jacqueline M Gulbis; Steven L Kazmirski; Jeff Finkelstein; Zvi Kelman; Mike O'Donnell; John Kuriyan
Journal:  Eur J Biochem       Date:  2004-01

10.  Sequences of the ssb gene and protein.

Authors:  A Sancar; K R Williams; J W Chase; W D Rupp
Journal:  Proc Natl Acad Sci U S A       Date:  1981-07       Impact factor: 11.205

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  65 in total

1.  E. coli SSB tetramer binds the first and second molecules of (dT)(35) with heat capacities of opposite sign.

Authors:  Alexander G Kozlov; Timothy M Lohman
Journal:  Biophys Chem       Date:  2011-05-12       Impact factor: 2.352

Review 2.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

3.  A mechanism for single-stranded DNA-binding protein (SSB) displacement from single-stranded DNA upon SSB-RecO interaction.

Authors:  Jin Inoue; Takayuki Nagae; Masaki Mishima; Yutaka Ito; Takehiko Shibata; Tsutomu Mikawa
Journal:  J Biol Chem       Date:  2010-12-17       Impact factor: 5.157

4.  The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA.

Authors:  Jaclyn N Hayner; Lauren G Douma; Linda B Bloom
Journal:  Nucleic Acids Res       Date:  2014-08-26       Impact factor: 16.971

5.  Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface.

Authors:  Boriana Marintcheva; Assen Marintchev; Gerhard Wagner; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-31       Impact factor: 11.205

Review 6.  SSB as an organizer/mobilizer of genome maintenance complexes.

Authors:  Robert D Shereda; Alexander G Kozlov; Timothy M Lohman; Michael M Cox; James L Keck
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Sep-Oct       Impact factor: 8.250

7.  C-terminal phenylalanine of bacteriophage T7 single-stranded DNA-binding protein is essential for strand displacement synthesis by T7 DNA polymerase at a nick in DNA.

Authors:  Sharmistha Ghosh; Boriana Marintcheva; Masateru Takahashi; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-09-02       Impact factor: 5.157

8.  SSB antagonizes RecX-RecA interaction.

Authors:  Dmitry M Baitin; Marielle C Gruenig; Michael M Cox
Journal:  J Biol Chem       Date:  2008-04-01       Impact factor: 5.157

9.  DdrB protein, an alternative Deinococcus radiodurans SSB induced by ionizing radiation.

Authors:  Cédric A Norais; Sindhu Chitteni-Pattu; Elizabeth A Wood; Ross B Inman; Michael M Cox
Journal:  J Biol Chem       Date:  2009-06-10       Impact factor: 5.157

10.  RecG interacts directly with SSB: implications for stalled replication fork regression.

Authors:  Jackson A Buss; Yuji Kimura; Piero R Bianco
Journal:  Nucleic Acids Res       Date:  2008-11-05       Impact factor: 16.971

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