Literature DB >> 15169040

Attraction between DNA molecules mediated by multivalent ions.

E Allahyarov1, G Gompper, H Löwen.   

Abstract

The effective force between two parallel DNA molecules is calculated as a function of their mutual separation for different valencies of counterion and salt ions and different salt concentrations. Computer simulations of the primitive model are used and the shape of the DNA molecules is accurately modeled using different geometrical shapes. We find that multivalent ions induce a significant attraction between the DNA molecules whose strength can be tuned by the averaged valency of the ions. The physical origin of the attraction is traced back either to electrostatics or to entropic contributions. For multivalent counterions and monovalent salt ions, we find a salt-enhanced repulsion effect: the force is first attractive but gets repulsive with increasing salt concentration. Furthermore, we show that the multivalent-ion-induced attraction does not necessarily correlate with DNA overcharging.

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Year:  2004        PMID: 15169040     DOI: 10.1103/PhysRevE.69.041904

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  18 in total

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2.  Statistical mechanics of columnar DNA assemblies.

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4.  A mesoscale model of DNA and its renaturation.

Authors:  E J Sambriski; D C Schwartz; J J de Pablo
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

5.  Open-Boundary Molecular Dynamics of a DNA Molecule in a Hybrid Explicit/Implicit Salt Solution.

Authors:  Julija Zavadlav; Jurij Sablić; Rudolf Podgornik; Matej Praprotnik
Journal:  Biophys J       Date:  2018-04-09       Impact factor: 4.033

6.  Ion-mediated nucleic acid helix-helix interactions.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

7.  Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA.

Authors:  Yuan-Yan Wu; Zhong-Liang Zhang; Jin-Si Zhang; Xiao-Long Zhu; Zhi-Jie Tan
Journal:  Nucleic Acids Res       Date:  2015-05-27       Impact factor: 16.971

8.  Symmetry of electrostatic interaction between pyrophosphate DNA molecules.

Authors:  V L Golo; E I Kats; S A Kuznetsova; Yu S Volkov
Journal:  Eur Phys J E Soft Matter       Date:  2010-01-20       Impact factor: 1.890

9.  DNA attraction in monovalent and divalent electrolytes.

Authors:  Binquan Luan; Aleksei Aksimentiev
Journal:  J Am Chem Soc       Date:  2008-11-26       Impact factor: 15.419

10.  A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation.

Authors:  Nikolay Korolev; Nikolay V Berezhnoy; Khee Dong Eom; James P Tam; Lars Nordenskiöld
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

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