Literature DB >> 15166147

The Zuker collection: a resource for the analysis of autosomal gene function in Drosophila melanogaster.

Edmund J Koundakjian1, David M Cowan, Robert W Hardy, Ann H Becker.   

Abstract

The majority of genes of multicellular organisms encode proteins with functions that are not required for viability but contribute to important physiological functions such as behavior and reproduction. It is estimated that 75% of the genes of Drosophila melanogaster are nonessential. Here we report on a strategy used to establish a large collection of stocks that is suitable for the recovery of mutations in such genes. From approximately 72,000 F(3) cultures segregating for autosomes heavily treated with ethyl methanesulfonate (EMS), approximately 12,000 lines in which the treated second or third chromosome survived in homozygous condition were selected. The dose of EMS induced an estimated rate of 1.2-1.5 x 10(-3) mutations/gene and predicts five to six nonessential gene mutations per chromosome and seven to nine alleles per locus in the samples of 6000 second chromosomes and 6000 third chromosomes. Due to mosaic mutations induced in the initial exposure to the mutagen, many of the lines are segregating or are now fixed for lethal mutations on the mutagenized chromosome. The features of this collection, known as the Zuker collection, make it a valuable resource for forward and reverse genetic screens for mutations affecting a wide array of biological functions.

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Year:  2004        PMID: 15166147      PMCID: PMC1470872          DOI: 10.1534/genetics.167.1.203

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  15 in total

1.  Targeted recovery of mutations in Drosophila.

Authors:  A Bentley; B MacLennan; J Calvo; C R Dearolf
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

2.  Mutation of the photoreceptor specific homeodomain gene Pph13 results in defects in phototransduction and rhabdomere morphogenesis.

Authors:  Andrew C Zelhof; Edmund Koundakjian; Audra L Scully; Robert W Hardy; Linda Pounds
Journal:  Development       Date:  2003-09       Impact factor: 6.868

3.  A multivalent PDZ-domain protein assembles signalling complexes in a G-protein-coupled cascade.

Authors:  S Tsunoda; J Sierralta; Y Sun; R Bodner; E Suzuki; A Becker; M Socolich; C S Zuker
Journal:  Nature       Date:  1997-07-17       Impact factor: 49.962

4.  Targeted screening for induced mutations.

Authors:  C M McCallum; L Comai; E A Greene; S Henikoff
Journal:  Nat Biotechnol       Date:  2000-04       Impact factor: 54.908

5.  Genetic analysis of the brahma gene of Drosophila melanogaster and polytene chromosome subdivisions 72AB.

Authors:  B J Brizuela; L Elfring; J Ballard; J W Tamkun; J A Kennison
Journal:  Genetics       Date:  1994-07       Impact factor: 4.562

6.  Soluble guanylate cyclase is required during development for visual system function in Drosophila.

Authors:  S M Gibbs; A Becker; R W Hardy; J W Truman
Journal:  J Neurosci       Date:  2001-10-01       Impact factor: 6.167

7.  The Synaptonemal complex component C(2)M regulates meiotic crossing over in Drosophila.

Authors:  Elizabeth A Manheim; Kim S McKim
Journal:  Curr Biol       Date:  2003-02-18       Impact factor: 10.834

8.  subito encodes a kinesin-like protein required for meiotic spindle pole formation in Drosophila melanogaster.

Authors:  Kelly L Giunta; Janet K Jang; Elizabeth A Manheim; Gayathri Subramanian; Kim S McKim
Journal:  Genetics       Date:  2002-04       Impact factor: 4.562

9.  The Drosophila light-activated conductance is composed of the two channels TRP and TRPL.

Authors:  B A Niemeyer; E Suzuki; K Scott; K Jalink; C S Zuker
Journal:  Cell       Date:  1996-05-31       Impact factor: 41.582

10.  Synaptic defects and compensatory regulation of inositol metabolism in inositol polyphosphate 1-phosphatase mutants.

Authors:  J K Acharya; P Labarca; R Delgado; K Jalink; C S Zuker
Journal:  Neuron       Date:  1998-06       Impact factor: 17.173

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  88 in total

1.  Drosophila sticky/citron kinase is a regulator of cell-cycle progression, genetically interacts with Argonaute 1 and modulates epigenetic gene silencing.

Authors:  Sarah J Sweeney; Paula Campbell; Giovanni Bosco
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

2.  Mutations in the chromosomal passenger complex and the condensin complex differentially affect synaptonemal complex disassembly and metaphase I configuration in Drosophila female meiosis.

Authors:  Tamar D Resnick; Kimberley J Dej; Youbin Xiang; R Scott Hawley; Caroline Ahn; Terry L Orr-Weaver
Journal:  Genetics       Date:  2008-12-22       Impact factor: 4.562

3.  Role of the mod(mdg4) common region in homolog segregation in Drosophila male meiosis.

Authors:  Morvarid Soltani-Bejnood; Sharon E Thomas; Louisa Villeneuve; Kierstyn Schwartz; Chia-Sin Hong; Bruce D McKee
Journal:  Genetics       Date:  2007-02-04       Impact factor: 4.562

4.  The two Drosophila cytochrome C proteins can function in both respiration and caspase activation.

Authors:  Eli Arama; Maya Bader; Mayank Srivastava; Andreas Bergmann; Hermann Steller
Journal:  EMBO J       Date:  2005-12-15       Impact factor: 11.598

5.  Retention of induced mutations in a Drosophila reverse-genetic resource.

Authors:  Jennifer L Cooper; Elizabeth A Greene; Bradley J Till; Christine A Codomo; Barbara T Wakimoto; Steven Henikoff
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

6.  Bursicon signaling mutations separate the epithelial-mesenchymal transition from programmed cell death during Drosophila melanogaster wing maturation.

Authors:  Jeanette E Natzle; John A Kiger; M M Green
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

7.  A proximal centriole-like structure is present in Drosophila spermatids and can serve as a model to study centriole duplication.

Authors:  Stephanie Blachon; Xuyu Cai; Kela A Roberts; Kevin Yang; Andrey Polyanovsky; Allen Church; Tomer Avidor-Reiss
Journal:  Genetics       Date:  2009-03-16       Impact factor: 4.562

8.  A genetic screen for sleep and circadian mutants reveals mechanisms underlying regulation of sleep in Drosophila.

Authors:  Mark N Wu; Kyunghee Koh; Zhifeng Yue; William J Joiner; Amita Sehgal
Journal:  Sleep       Date:  2008-04       Impact factor: 5.849

9.  no poles encodes a predicted E3 ubiquitin ligase required for early embryonic development of Drosophila.

Authors:  Julie A Merkle; Jamie L Rickmyre; Aprajita Garg; Erin B Loggins; Jeanne N Jodoin; Ethan Lee; Louisa P Wu; Laura A Lee
Journal:  Development       Date:  2009-02       Impact factor: 6.868

10.  Drosophila asterless and vertebrate Cep152 Are orthologs essential for centriole duplication.

Authors:  Stephanie Blachon; Jayachandran Gopalakrishnan; Yoshihiro Omori; Andrey Polyanovsky; Allen Church; Daniela Nicastro; Jarema Malicki; Tomer Avidor-Reiss
Journal:  Genetics       Date:  2008-10-14       Impact factor: 4.562

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