Literature DB >> 15161261

A highly discriminating quencher-free molecular beacon for probing DNA.

Gil Tae Hwang1, Young Jun Seo, Byeang Hyean Kim.   

Abstract

We inserted a fluorene-labeled deoxyuridine derivative, synthesized using Sonogashira coupling, efficiently into the loop region of a DNA hairpin using phosphoramidite chemistry. This molecular beacon, which features no additional fluorescence quencher, discriminates between perfect and one-base-mismatched base pairing by changes in its fluorescence intensity. The discrimination factor is 14.7 for the recognition of a single (A/C) base mismatch.

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Year:  2004        PMID: 15161261     DOI: 10.1021/ja049795q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Synthesis and optical properties of various thienyl derivatives of pyrene.

Authors:  Krzysztof R Idzik; Tobias Licha; Vladimír Lukeš; Peter Rapta; Jaroslaw Frydel; Mario Schaffer; Eric Taeuscher; Rainer Beckert; Lothar Dunsch
Journal:  J Fluoresc       Date:  2013-08-06       Impact factor: 2.217

Review 2.  Recent advances in peptide nucleic acid for cancer bionanotechnology.

Authors:  Jun-Chen Wu; Qing-Chun Meng; Hong-Mei Ren; Hong-Tao Wang; Jie Wu; Qi Wang
Journal:  Acta Pharmacol Sin       Date:  2017-04-17       Impact factor: 6.150

3.  Sensing metal ions with DNA building blocks: fluorescent pyridobenzimidazole nucleosides.

Authors:  Su Jeong Kim; Eric T Kool
Journal:  J Am Chem Soc       Date:  2006-05-10       Impact factor: 15.419

4.  Induced Apoptosis Investigation in Wild-type and FLT3-ITD Acute Myeloid Leukemia Cells by Nanochannel Electroporation and Single-cell qRT-PCR.

Authors:  Keliang Gao; Xiaomeng Huang; Chi-Ling Chiang; Xinmei Wang; Lingqian Chang; Pouyan Boukany; Guido Marcucci; Robert Lee; Ly James Lee
Journal:  Mol Ther       Date:  2016-01-19       Impact factor: 11.454

5.  Oligodeoxyfluorosides: Strong Sequence Dependence of Fluorescence Emission.

Authors:  James N Wilson; Jianmin Gao; Eric T Kool
Journal:  Tetrahedron       Date:  2007-04-23       Impact factor: 2.457

6.  Fluorescence detection of single-nucleotide polymorphisms with a single, self-complementary, triple-stem DNA probe.

Authors:  Yi Xiao; Kory J I Plakos; Xinhui Lou; Ryan J White; Jiangrong Qian; Kevin W Plaxco; H Tom Soh
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 7.  Fluorogenic PNA probes.

Authors:  Tirayut Vilaivan
Journal:  Beilstein J Org Chem       Date:  2018-01-29       Impact factor: 2.883

Review 8.  Single-Labeled Oligonucleotides Showing Fluorescence Changes Upon Hybridization with Target Nucleic Acids.

Authors:  Gil Tae Hwang
Journal:  Molecules       Date:  2018-01-08       Impact factor: 4.411

Review 9.  Molecular beacons of xeno-nucleic acid for detecting nucleic acid.

Authors:  Qi Wang; Lei Chen; Yitao Long; He Tian; Junchen Wu
Journal:  Theranostics       Date:  2013-05-05       Impact factor: 11.556

10.  Synthesis and photophysical study of 2'-deoxyuridines labeled with fluorene derivatives.

Authors:  Hyun Yi Cho; Sang Keun Woo; Gil Tae Hwang
Journal:  Molecules       Date:  2012-10-15       Impact factor: 4.411

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