Literature DB >> 15135028

Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations.

Ralf Steuer1.   

Abstract

Noise and fluctuations are ubiquitous in living systems. Still, the interaction between complex biochemical regulatory systems and the inherent fluctuations ('noise') is only poorly understood. As a paradigmatic example, we study the implications of noise on a recently proposed model of the eukaryotic cell cycle, representing a complex network of interactions between several genes and proteins. The purpose of this work is twofold: First, we show that the inclusion of noise into the description of the system accounts for several recent experimental findings, as e.g. the existence of quantized cycle times in wee1- cdc25delta double-mutant cells of fission yeast. In the main part, we then focus on more general aspects of the interplay between noise and the dynamics of the system. In particular, we demonstrate that a stochastic description leads to qualitative changes in the dynamics, such as the emergence of noise-induced oscillations. These findings will be discussed in the light of an ongoing debate on models of cell division as limit-cycle oscillators versus checkpoint mechanisms.

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Year:  2004        PMID: 15135028     DOI: 10.1016/j.jtbi.2004.01.012

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  16 in total

1.  Intrinsic noise and division cycle effects on an abstract biological oscillator.

Authors:  Michail Stamatakis; Nikos V Mantzaris
Journal:  Chaos       Date:  2010-09       Impact factor: 3.642

2.  Analysis of a generic model of eukaryotic cell-cycle regulation.

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Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

3.  Exploring the roles of noise in the eukaryotic cell cycle.

Authors:  Sandip Kar; William T Baumann; Mark R Paul; John J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

4.  A genetic timer through noise-induced stabilization of an unstable state.

Authors:  Marc Turcotte; Jordi Garcia-Ojalvo; Gürol M Süel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-03       Impact factor: 11.205

5.  Implications of a simple mathematical model to cancer cell population dynamics.

Authors:  A L Garner; Y Y Lau; D W Jordan; M D Uhler; R M Gilgenbach
Journal:  Cell Prolif       Date:  2006-02       Impact factor: 6.831

6.  Derivation and experimental comparison of cell-division probability densities.

Authors:  R Leander; E J Allen; S P Garbett; D R Tyson; V Quaranta
Journal:  J Theor Biol       Date:  2014-06-12       Impact factor: 2.691

7.  Deterministic and stochastic models of genetic regulatory networks.

Authors:  Ilya Shmulevich; John D Aitchison
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

8.  The cell cycle switch computes approximate majority.

Authors:  Luca Cardelli; Attila Csikász-Nagy
Journal:  Sci Rep       Date:  2012-09-13       Impact factor: 4.379

9.  A model of yeast cell-cycle regulation based on multisite phosphorylation.

Authors:  Debashis Barik; William T Baumann; Mark R Paul; Bela Novak; John J Tyson
Journal:  Mol Syst Biol       Date:  2010-08-24       Impact factor: 11.429

10.  A mathematical model of mitotic exit in budding yeast: the role of Polo kinase.

Authors:  Baris Hancioglu; John J Tyson
Journal:  PLoS One       Date:  2012-02-23       Impact factor: 3.240

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