Literature DB >> 15130928

TargetDB: a target registration database for structural genomics projects.

Li Chen1, Rose Oughtred, Helen M Berman, John Westbrook.   

Abstract

UNLABELLED: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked over time, and target data from all contributing centers may also be downloaded in the XML format. AVAILABILITY: TargetDB is available at http://targetdb.pdb.org/

Mesh:

Substances:

Year:  2004        PMID: 15130928     DOI: 10.1093/bioinformatics/bth300

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  89 in total

1.  Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.

Authors:  Heping Zheng; Ekaterina V Filippova; Karolina L Tkaczuk; Piotr Dworzynski; Maksymilian Chruszcz; Przemyslaw J Porebski; Zdzislaw Wawrzak; Olena Onopriyenko; Marina Kudritska; Sarah Grimshaw; Alexei Savchenko; Wayne F Anderson; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2012-03-10

2.  Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome.

Authors:  James E Bray
Journal:  J Struct Funct Genomics       Date:  2012-02-22

3.  Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Authors:  Joseph R Luft; Edward H Snell; George T Detitta
Journal:  Expert Opin Drug Discov       Date:  2011-03-22       Impact factor: 6.098

4.  Pilot studies on the parallel production of soluble mouse proteins in a bacterial expression system.

Authors:  Nathan P Cowieson; Pawel Listwan; Mareike Kurz; Anna Aagaard; Timothy Ravasi; Christine Wells; Thomas Huber; David A Hume; Bostjan Kobe; Jennifer L Martin
Journal:  J Struct Funct Genomics       Date:  2005

5.  Towards fully automated structure-based function prediction in structural genomics: a case study.

Authors:  James D Watson; Steve Sanderson; Alexandra Ezersky; Alexei Savchenko; Aled Edwards; Christine Orengo; Andrzej Joachimiak; Roman A Laskowski; Janet M Thornton
Journal:  J Mol Biol       Date:  2007-01-30       Impact factor: 5.469

6.  Establishing synthesis pathway-host compatibility via enzyme solubility.

Authors:  Sara A Amin; Venkatesh Endalur Gopinarayanan; Nikhil U Nair; Soha Hassoun
Journal:  Biotechnol Bioeng       Date:  2019-03-29       Impact factor: 4.530

7.  Growth of novel protein structural data.

Authors:  Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

Review 8.  Structural genomics: keeping up with expanding knowledge of the protein universe.

Authors:  Marek Grabowski; Andrzej Joachimiak; Zbyszek Otwinowski; Wladek Minor
Journal:  Curr Opin Struct Biol       Date:  2007-06-22       Impact factor: 6.809

9.  StrBioLib: a Java library for development of custom computational structural biology applications.

Authors:  John-Marc Chandonia
Journal:  Bioinformatics       Date:  2007-05-30       Impact factor: 6.937

10.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.