Literature DB >> 15128588

Specific PCR assay for a tannin-tolerant selenomonas ruminantium isolate, derived from helicase coding sequences.

Richard Bishop1, Moses Obura, David Odongo, Agnes Odenyo.   

Abstract

Sequences from a tannin-tolerant Selenomonas ruminantium isolate (EAT2) that hydrolyzes gallic acid were identified. Two exhibited identity to helicases with a wide phylogenetic distribution. PCR amplification by using primers from one helicase gene detected 2000 to 5000 EAT2 genome equivalents but did not amplify total gastrointestinal microbial DNA of nine other ungulate species.

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Year:  2004        PMID： 15128588      PMCID： PMC404376          DOI： 10.1128/AEM.70.5.3180-3182.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  11 in total

1.  A genomic view of the human-Bacteroides thetaiotaomicron symbiosis.

Authors:  Jian Xu; Magnus K Bjursell; Jason Himrod; Su Deng; Lynn K Carmichael; Herbert C Chiang; Lora V Hooper; Jeffrey I Gordon
Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

2.  Equalizing cDNA subtraction based on selective suppression of polymerase chain reaction: cloning of Jurkat cell transcripts induced by phytohemaglutinin and phorbol 12-myristate 13-acetate.

Authors:  N G Gurskaya; L Diatchenko; A Chenchik; P D Siebert; G L Khaspekov; K A Lukyanov; L L Vagner; O D Ermolaeva; S A Lukyanov; E D Sverdlov
Journal:  Anal Biochem       Date:  1996-08-15       Impact factor: 3.365

3.  Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.

Authors:  L Diatchenko; Y F Lau; A P Campbell; A Chenchik; F Moqadam; B Huang; S Lukyanov; K Lukyanov; N Gurskaya; E D Sverdlov; P D Siebert
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-11       Impact factor: 11.205

4.  Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.

Authors:  Vinayak Kapatral; Iain Anderson; Natalia Ivanova; Gary Reznik; Tamara Los; Athanasios Lykidis; Anamitra Bhattacharyya; Allen Bartman; Warren Gardner; Galina Grechkin; Lihua Zhu; Olga Vasieva; Lien Chu; Yakov Kogan; Oleg Chaga; Eugene Goltsman; Axel Bernal; Niels Larsen; Mark D'Souza; Theresa Walunas; Gordon Pusch; Robert Haselkorn; Michael Fonstein; Nikos Kyrpides; Ross Overbeek
Journal:  J Bacteriol       Date:  2002-04       Impact factor: 3.490

5.  Characterization of tannin acylhydrolase activity in the ruminal bacterium Selenomonas ruminantium.

Authors:  I K Skene; J D Brooker
Journal:  Anaerobe       Date:  1995-12       Impact factor: 3.331

6.  Detection of Clostridium proteoclasticum and closely related strains in the rumen by competitive PCR.

Authors:  K Reilly; G T Attwood
Journal:  Appl Environ Microbiol       Date:  1998-03       Impact factor: 4.792

7.  Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence.

Authors:  Stephen B Beres; Gail L Sylva; Kent D Barbian; Benfang Lei; Jessica S Hoff; Nicole D Mammarella; Meng-Yao Liu; James C Smoot; Stephen F Porcella; Larye D Parkins; David S Campbell; Todd M Smith; John K McCormick; Donald Y M Leung; Patrick M Schlievert; James M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-16       Impact factor: 11.205

8.  Tannin-tolerant ruminal bacteria from East African ruminants.

Authors:  A A Odenyo; P O Osuji
Journal:  Can J Microbiol       Date:  1998-09       Impact factor: 2.419

9.  Phenotypic and phylogenetic characterization of ruminal tannin-tolerant bacteria.

Authors:  K E Nelson; M L Thonney; T K Woolston; S H Zinder; A N Pell
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

10.  Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche.

Authors:  Karen E Nelson; Stephen H Zinder; Ioana Hance; Patrick Burr; David Odongo; Delia Wasawo; Agnes Odenyo; Richard Bishop
Journal:  Environ Microbiol       Date:  2003-11       Impact factor: 5.491
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