Literature DB >> 15125236

[Molecular morphology of eukaryotic class I translation termination factor eRF1 in solution].

A V Kononenko1, K A Dembo, L L Kiselev, V V Volkov.   

Abstract

The integral structural parameters and the shape of the molecule of human translation termination factor eRF1 were determined from the small-angle X-ray scattering in solution. The molecular shapes were found by bead modeling with nonlinear minimization of the root-mean-square deviation of the calculated from the experimental scattering curve. Comparisons of the small-angle scattering curves computed for atomic-resolution structures of eRF1 with the experimental data on scattering from solution testified that the crystal and the solution conformations are close. In the ribosome, the distance between the eRF1 motifs GGQ and NIKS must be shorter than in crystal or solution (75 versus 107-112 A). Therefore, like its bacterial counterpart RF2, the eukaryotic eRF1 must change its conformation as it binds to the ribosome. The conformational mobility of eukaryotic and prokaryotic class-1 release factors is another feature making them functionally akin to tRNA.

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Year:  2004        PMID: 15125236

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  3 in total

1.  Three distinct peptides from the N domain of translation termination factor eRF1 surround stop codon in the ribosome.

Authors:  Konstantin N Bulygin; Yulia S Khairulina; Petr M Kolosov; Aliya G Ven'yaminova; Dmitri M Graifer; Yuri N Vorobjev; Ludmila Yu Frolova; Lev L Kisselev; Galina G Karpova
Journal:  RNA       Date:  2010-08-05       Impact factor: 4.942

2.  Release factors 2 from Escherichia coli and Thermus thermophilus: structural, spectroscopic and microcalorimetric studies.

Authors:  Gabriel Zoldák; Lars Redecke; Dmitri I Svergun; Peter V Konarev; C Stefan Voertler; Holger Dobbek; Erik Sedlák; Mathias Sprinzl
Journal:  Nucleic Acids Res       Date:  2007-02-01       Impact factor: 16.971

3.  GTP-dependent structural rearrangement of the eRF1:eRF3 complex and eRF3 sequence motifs essential for PABP binding.

Authors:  Artem V Kononenko; Vladimir A Mitkevich; Gemma C Atkinson; Tanel Tenson; Vera I Dubovaya; Ludmila Yu Frolova; Alexander A Makarov; Vasili Hauryliuk
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

  3 in total

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