Literature DB >> 15119834

DNA pooling as a tool for large-scale association studies in complex traits.

Nadine Norton1, Nigel M Williams, Michael C O'Donovan, Michael J Owen.   

Abstract

Pooled genotyping is a powerful and efficient tool for high throughput association analysis, both case-control and family-based. The use of pooling designs can significantly reduce the consumable and labour costs of a study. At the same time, since it is also extremely efficient with DNA resources, pooling can be an extremely effective method for conserving DNA. Here, we consider the main points in study design, and illustrate the application of pooling using psychiatric phenotypes as an example.

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Year:  2004        PMID: 15119834     DOI: 10.1080/07853890310021724

Source DB:  PubMed          Journal:  Ann Med        ISSN: 0785-3890            Impact factor:   4.709


  31 in total

Review 1.  Introduction to deep sequencing and its application to drug addiction research with a focus on rare variants.

Authors:  Shaolin Wang; Zhongli Yang; Jennie Z Ma; Thomas J Payne; Ming D Li
Journal:  Mol Neurobiol       Date:  2013-08-30       Impact factor: 5.590

2.  Constructing the parental linkage phase and the genetic map over distances <1 cM using pooled haploid DNA.

Authors:  Dario Gasbarra; Mikko J Sillanpää
Journal:  Genetics       Date:  2005-11-19       Impact factor: 4.562

3.  Identification of the genetic basis for complex disorders by use of pooling-based genomewide single-nucleotide-polymorphism association studies.

Authors:  John V Pearson; Matthew J Huentelman; Rebecca F Halperin; Waibhav D Tembe; Stacey Melquist; Nils Homer; Marcel Brun; Szabolcs Szelinger; Keith D Coon; Victoria L Zismann; Jennifer A Webster; Thomas Beach; Sigrid B Sando; Jan O Aasly; Reinhard Heun; Frank Jessen; Heike Kolsch; Magdalini Tsolaki; Makrina Daniilidou; Eric M Reiman; Andreas Papassotiropoulos; Michael L Hutton; Dietrich A Stephan; David W Craig
Journal:  Am J Hum Genet       Date:  2006-12-06       Impact factor: 11.025

4.  Strong evidence that KIAA0319 on chromosome 6p is a susceptibility gene for developmental dyslexia.

Authors:  Natalie Cope; Denise Harold; Gary Hill; Valentina Moskvina; Jim Stevenson; Peter Holmans; Michael J Owen; Michael C O'Donovan; Julie Williams
Journal:  Am J Hum Genet       Date:  2005-02-16       Impact factor: 11.025

5.  A genetic analysis of serotonergic biosynthetic and metabolic enzymes in migraine using a DNA pooling approach.

Authors:  Matthew P Johnson; Lyn R Griffiths
Journal:  J Hum Genet       Date:  2005-10-01       Impact factor: 3.172

Review 6.  Genetics of acute rejection after kidney transplantation.

Authors:  Casey R Dorr; William S Oetting; Pamala A Jacobson; Ajay K Israni
Journal:  Transpl Int       Date:  2017-11-08       Impact factor: 3.782

7.  Design of association studies with pooled or un-pooled next-generation sequencing data.

Authors:  Su Yeon Kim; Yingrui Li; Yiran Guo; Ruiqiang Li; Johan Holmkvist; Torben Hansen; Oluf Pedersen; Jun Wang; Rasmus Nielsen
Journal:  Genet Epidemiol       Date:  2010-07       Impact factor: 2.135

8.  Genetic variations of ANGPTL6 gene and their associations with growth traits and slaughter traits in Qinchuan cattle.

Authors:  Ai-Min Li; Xian-Yong Lan; Xiao-Mei Sun; Yuan Gao; Wei Ma; Yun Ma; Hong Chen
Journal:  Mol Biol Rep       Date:  2012-06-29       Impact factor: 2.316

9.  Testing linkage disequilibrium from pooled DNA: a contingency table perspective.

Authors:  Jinfeng Xu; Yaning Yang; Zhiliang Ying; Jurg Ott
Journal:  Stat Med       Date:  2008-12-10       Impact factor: 2.373

10.  Genome-wide association study for ovarian cancer susceptibility using pooled DNA.

Authors:  Stuart Macgregor; Georgia Chenevix-Trench; Yi Lu; Xiaoqing Chen; Jonathan Beesley; Sharon E Johnatty; Anna deFazio; Sandrina Lambrechts; Diether Lambrechts; Evelyn Despierre; Ignace Vergotes; Jenny Chang-Claude; Rebecca Hein; Stefan Nickels; Shan Wang-Gohrke; Thilo Dörk; Matthias Dürst; Natalia Antonenkova; Natalia Bogdanova; Marc T Goodman; Galina Lurie; Lynne R Wilkens; Michael E Carney; Ralf Butzow; Heli Nevanlinna; Tuomas Heikkinen; Arto Leminen; Lambertus A Kiemeney; Leon F A G Massuger; Anne M van Altena; Katja K Aben; Susanne Krüger Kjaer; Estrid Høgdall; Allan Jensen; Angela Brooks-Wilson; Nhu Le; Linda Cook; Madalene Earp; Linda Kelemen; Douglas Easton; Paul Pharoah; Honglin Song; Jonathan Tyrer; Susan Ramus; Usha Menon; Alexandra Gentry-Maharaj; Simon A Gayther; Elisa V Bandera; Sara H Olson; Irene Orlow; Lorna Rodriguez-Rodriguez
Journal:  Twin Res Hum Genet       Date:  2012-07-13       Impact factor: 1.587

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