Literature DB >> 15113234

Characterization of fluxional hydrogen-bonded complexes of acetic acid and acetate by NMR: geometries and isotope and solvent effects.

Peter M Tolstoy1, Parwin Schah-Mohammedi, Sergei N Smirnov, Nikolai S Golubev, Gleb S Denisov, Hans-Heinrich Limbach.   

Abstract

1H, (2)H, and (13)C NMR spectra of enriched CH(3)(13)COOH acid without and in the presence of tetra-n-butylammonium acetate have been measured around 110 K using a liquefied Freon mixture CDF(3)/CDF(2)Cl as a solvent, as a function of the deuterium fraction in the mobile proton sites. For comparison, spectra were also taken of the adduct CH(3)(13)COOH.SbCl(5) 1 and of CH(2)Cl(13)COOH under similar conditions, as well as of CH(3)(13)COOH and CH(3)(13)COO(-) dissolved in H(2)O and D(2)O at low and high pH at 298 K. The low temperatures employed allowed us to detect several well-known and novel hydrogen-bonded complexes in the slow hydrogen bond exchange regime and to determine chemical shifts and coupling constants as well as H/D isotope effects on chemical shifts from the fine structure of the corresponding signals. The measurements show that self-association of both carboxylic acids in Freon solution gives rise exclusively to the formation of cyclic dimers 2 and 3 exhibiting a rapid degenerate double proton transfer. For the first time, a two-bond coupling of the type (2)J(CH(3)COOH) between a hydrogen-bonded proton and the carboxylic carbon has been observed, which is slightly smaller than half of the value observed for 1. In addition, the (1)H and (2)H chemical shifts of the HH, HD, and the DD isotopologues of 2 and 3 have been determined as well as the corresponding HH/HD/DD isotope effects on the (13)C chemical shifts. Similar "primary", "vicinal", and "secondary" isotope effects were observed for the novel 2:1 complex "dihydrogen triacetate" 5 between acetic acid and acetate. Another novel species is the 3:1 complex "trihydrogen tetraacetate" 6, which was also characterized by a complex degenerate combined hydrogen bond- and proton-transfer process. For comparison, the results obtained previously for hydrogen diacetate 4 and hydrogen maleate 7 are discussed. Using an improved (1)H chemical shift-hydrogen bond geometry correlation, the chemical shift data are converted into hydrogen bond geometries. They indicate cooperative hydrogen bonds in the cyclic dimers; i.e., widening of a given hydrogen bond by H/D substitution also widens the other coupled hydrogen bond. By contrast, the hydrogen bonds in 5 are anticooperative. The measurements show that ionization shifts the (13)C signal of the carboxyl group to low field when the group is immersed in water, but to high field when it is embedded in a polar aprotic environment. This finding allows us to understand the unusual ionization shift of aspartate groups in the HIV-pepstatin complex observed by Smith, R.; Brereton, I. M.; Chai, R. Y.; Kent, S. B. H. Nature Struct. Biol. 1996, 3, 946. It is demonstrated that the Freon solvents used in this study are better environments for model studies of amino acid interactions than aqueous or protic environments. Finally, a novel correlation of the hydrogen bond geometries with the H/D isotope effects on the (13)C chemical shifts of carboxylic acid groups is proposed, which allows one to estimate the hydrogen bond geometries and protonation states of these groups. It is shown that absence of such an isotope effect is not only compatible with an isolated carboxylate group but also with the presence of a short and strong hydrogen bond.

Entities:  

Year:  2004        PMID: 15113234     DOI: 10.1021/ja039280j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Double proton transfer dynamics of model DNA base pairs in the condensed phase.

Authors:  Oh-Hoon Kwon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-14       Impact factor: 11.205

2.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

3.  Hydrogen bond coupling in sodium dihydrogen triacetate.

Authors:  Ashour A Ahmed; Rifaat H Hilal; Mohamed F Shibl
Journal:  J Mol Model       Date:  2014-07-20       Impact factor: 1.810

4.  Hydrogen bond dynamics in the active site of photoactive yellow protein.

Authors:  Paul A Sigala; Mark A Tsuchida; Daniel Herschlag
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-26       Impact factor: 11.205

5.  Hydrogen bond coupling in the ketosteroid isomerase active site.

Authors:  Paul A Sigala; Jose M M Caaveiro; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  Biochemistry       Date:  2009-07-28       Impact factor: 3.162

6.  Complexity in Acid-Base Titrations: Multimer Formation Between Phosphoric Acids and Imines.

Authors:  Christian Malm; Heejae Kim; Manfred Wagner; Johannes Hunger
Journal:  Chemistry       Date:  2017-07-24       Impact factor: 5.236

Review 7.  Hydrogen Atomic Positions of O-H···O Hydrogen Bonds in Solution and in the Solid State: The Synergy of Quantum Chemical Calculations with ¹H-NMR Chemical Shifts and X-ray Diffraction Methods.

Authors:  Michael G Siskos; M Iqbal Choudhary; Ioannis P Gerothanassis
Journal:  Molecules       Date:  2017-03-07       Impact factor: 4.411

Review 8.  Isotope effects on chemical shifts in the study of intramolecular hydrogen bonds.

Authors:  Poul Erik Hansen
Journal:  Molecules       Date:  2015-01-30       Impact factor: 4.411

9.  H/D Isotope Effects on 1H-NMR Chemical Shifts in Cyclic Heterodimers and Heterotrimers of Phosphinic and Phosphoric Acids.

Authors:  Valeriia V Mulloyarova; Daria O Ustimchuk; Aleksander Filarowski; Peter M Tolstoy
Journal:  Molecules       Date:  2020-04-20       Impact factor: 4.411

10.  Geometric isotope effect of deuteration in a hydrogen-bonded host-guest crystal.

Authors:  Chao Shi; Xi Zhang; Chun-Hua Yu; Ye-Feng Yao; Wen Zhang
Journal:  Nat Commun       Date:  2018-02-02       Impact factor: 14.919

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