Literature DB >> 15111060

A kinetic analysis of the nucleotide-induced allosteric transitions in a single-ring mutant of GroEL.

Daniel Poso1, Anthony R Clarke, Steven G Burston.   

Abstract

The function of GroE requires a complex system of allosteric communication driven by protein-nucleotide interactions. These rearrangements couple the binding and hydrolysis of ATP to an overall reaction cycle in which substrate proteins are bound, encapsulated and released. Positive cooperativity with respect to ATP binding occurs within one heptameric ring of GroEL, while negative cooperativity between the two rings generates an inherent asymmetry between the two rings. A previously engineered mutant of GroEL in which the ring-ring contacts are broken gives rise to a single-ring version of the wild-type chaperonin (SR1). We have studied the kinetics of the nucleotide-induced conformational changes in a single-tryptophan variant of SR1 (Y485W-SR1) and compared the resulting data with those we reported previously for the double-ring, single-tryptophan variant of wild-type GroEL (Y485W-GroEL). Remarkably, the parting of the rings does not have a major effect on the conformational changes occurring within the heptameric ring and a kinetic model is presented to describe the sequence of structural rearrangements that occur upon ATP binding to the SR1 molecule. The observation that both the ATP-induced and ADP-induced conformational rearrangements occur more rapidly in the SR1 than they do in wild-type GroEL, indicates that intra-ring conformational changes in the double-ring structure must overcome conformational constraints provided by the presence of the second ring. Lastly, the data presented here imply a role for inter-ring allostery in controlling the dissociation-association behaviour of the GroES co-protein in the overall reaction cycle.

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Year:  2004        PMID: 15111060     DOI: 10.1016/j.jmb.2004.03.010

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  7 in total

1.  Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.

Authors:  Gabriel A Frank; Mila Goomanovsky; Amit Davidi; Guy Ziv; Amnon Horovitz; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

2.  GroEL stimulates protein folding through forced unfolding.

Authors:  Zong Lin; Damian Madan; Hays S Rye
Journal:  Nat Struct Mol Biol       Date:  2008-03-02       Impact factor: 15.369

3.  Triggering protein folding within the GroEL-GroES complex.

Authors:  Damian Madan; Zong Lin; Hays S Rye
Journal:  J Biol Chem       Date:  2008-09-09       Impact factor: 5.157

4.  Probing the dynamic process of encapsulation in Escherichia coli GroEL.

Authors:  Toshifumi Mizuta; Kasumi Ando; Tatsuya Uemura; Yasushi Kawata; Tomohiro Mizobata
Journal:  PLoS One       Date:  2013-10-30       Impact factor: 3.240

5.  GroEL actively stimulates folding of the endogenous substrate protein PepQ.

Authors:  Jeremy Weaver; Mengqiu Jiang; Andrew Roth; Jason Puchalla; Junjie Zhang; Hays S Rye
Journal:  Nat Commun       Date:  2017-06-30       Impact factor: 14.919

6.  Probing water density and dynamics in the chaperonin GroEL cavity.

Authors:  John M Franck; Miri Sokolovski; Naama Kessler; Erez Matalon; Michal Gordon-Grossman; Song-I Han; Daniella Goldfarb; Amnon Horovitz
Journal:  J Am Chem Soc       Date:  2014-06-20       Impact factor: 15.419

7.  Structure and conformational cycle of a bacteriophage-encoded chaperonin.

Authors:  Andreas Bracher; Simanta S Paul; Huping Wang; Nadine Wischnewski; F Ulrich Hartl; Manajit Hayer-Hartl
Journal:  PLoS One       Date:  2020-04-27       Impact factor: 3.240

  7 in total

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