Literature DB >> 15102471

Bioinformatics and cellular signaling.

Jason Papin1, Shankar Subramaniam.   

Abstract

The understanding of cellular function requires an integrated analysis of context-specific, spatiotemporal data from diverse sources. Recent advances in describing the genomic and proteomic 'parts list' of the cell and deciphering the interrelationship of these parts are described, including genome-wide location analysis, standards for microarray data analysis, and two-hybrid and mass spectrometry approaches. This information is being collected and curated in databases such as the Alliance for Cellular Signaling (AfCS) Molecule Pages, which will serve as vital tools for the reconstruction and analysis of cellular signaling networks.

Mesh:

Year:  2004        PMID: 15102471     DOI: 10.1016/j.copbio.2004.01.003

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  7 in total

1.  SH3 domain-based phototrapping in living cells reveals Rho family GAP signaling complexes.

Authors:  Hirokazu Okada; Akiyoshi Uezu; Frank M Mason; Erik J Soderblom; M Arthur Moseley; Scott H Soderling
Journal:  Sci Signal       Date:  2011-11-29       Impact factor: 8.192

Review 2.  Bioinformatics and systems biology of the lipidome.

Authors:  Shankar Subramaniam; Eoin Fahy; Shakti Gupta; Manish Sud; Robert W Byrnes; Dawn Cotter; Ashok Reddy Dinasarapu; Mano Ram Maurya
Journal:  Chem Rev       Date:  2011-09-23       Impact factor: 60.622

Review 3.  Tristetraprolin (TTP): interactions with mRNA and proteins, and current thoughts on mechanisms of action.

Authors:  Seth A Brooks; Perry J Blackshear
Journal:  Biochim Biophys Acta       Date:  2013-02-18

4.  The Biomolecular Interaction Network Database and related tools 2005 update.

Authors:  C Alfarano; C E Andrade; K Anthony; N Bahroos; M Bajec; K Bantoft; D Betel; B Bobechko; K Boutilier; E Burgess; K Buzadzija; R Cavero; C D'Abreo; I Donaldson; D Dorairajoo; M J Dumontier; M R Dumontier; V Earles; R Farrall; H Feldman; E Garderman; Y Gong; R Gonzaga; V Grytsan; E Gryz; V Gu; E Haldorsen; A Halupa; R Haw; A Hrvojic; L Hurrell; R Isserlin; F Jack; F Juma; A Khan; T Kon; S Konopinsky; V Le; E Lee; S Ling; M Magidin; J Moniakis; J Montojo; S Moore; B Muskat; I Ng; J P Paraiso; B Parker; G Pintilie; R Pirone; J J Salama; S Sgro; T Shan; Y Shu; J Siew; D Skinner; K Snyder; R Stasiuk; D Strumpf; B Tuekam; S Tao; Z Wang; M White; R Willis; C Wolting; S Wong; A Wrong; C Xin; R Yao; B Yates; S Zhang; K Zheng; T Pawson; B F F Ouellette; C W V Hogue
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

5.  Muscle RING-finger 2 and 3 maintain striated-muscle structure and function.

Authors:  Dörte Lodka; Aanchal Pahuja; Cornelia Geers-Knörr; Renate J Scheibe; Marcel Nowak; Jida Hamati; Clemens Köhncke; Bettina Purfürst; Tamara Kanashova; Sibylle Schmidt; David J Glass; Ingo Morano; Arnd Heuser; Theresia Kraft; Rhonda Bassel-Duby; Eric N Olson; Gunnar Dittmar; Thomas Sommer; Jens Fielitz
Journal:  J Cachexia Sarcopenia Muscle       Date:  2015-09-07       Impact factor: 12.910

6.  ESCRT-III binding protein MITD1 is involved in cytokinesis and has an unanticipated PLD fold that binds membranes.

Authors:  Michael A Hadders; Monica Agromayor; Takayuki Obita; Olga Perisic; Anna Caballe; Magdalena Kloc; Meindert H Lamers; Roger L Williams; Juan Martin-Serrano
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

7.  Comparison of Chromosome 4 gene expression profile between lung telocytes and other local cell types.

Authors:  Dongli Song; Dragos Cretoiu; Minghuan Zheng; Mengjia Qian; Miaomiao Zhang; Sanda M Cretoiu; Luonan Chen; Hao Fang; Laurentiu M Popescu; Xiangdong Wang
Journal:  J Cell Mol Med       Date:  2015-12-17       Impact factor: 5.310

  7 in total

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