Literature DB >> 15102448

DNA glycosylase recognition and catalysis.

J Christopher Fromme1, Anirban Banerjee, Gregory L Verdine.   

Abstract

DNA glycosylases are the enzymes responsible for recognizing base lesions in the genome and initiating base excision DNA repair. Recent structural and biochemical results have provided novel insights into DNA damage recognition and repair. The basis of the recognition of the oxidative lesion 8-oxoguanine by two structurally unrelated DNA glycosylases is now understood and has been revealed to involve surprisingly similar strategies. Work on MutM (Fpg) has produced structures representing three discrete reaction steps. The NMR structure of 3-methyladenine glycosylase I revealed its place among the structural families of DNA glycosylases and the X-ray structure of SMUG1 likewise confirmed that this protein is a member of the uracil DNA glycosylase superfamily. A novel disulfide cross-linking strategy was used to obtain the long-anticipated structure of MutY bound to DNA containing an A*oxoG mispair.

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Year:  2004        PMID: 15102448     DOI: 10.1016/j.sbi.2004.01.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  76 in total

1.  DNA methylation and demethylation in Arabidopsis.

Authors:  Mary Gehring; Steven Henikoff
Journal:  Arabidopsis Book       Date:  2008-05-23

2.  Intrinsic apurinic/apyrimidinic (AP) endonuclease activity enables Bacillus subtilis DNA polymerase X to recognize, incise, and further repair abasic sites.

Authors:  Benito Baños; Laurentino Villar; Margarita Salas; Miguel de Vega
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

Review 3.  Base-excision repair of oxidative DNA damage.

Authors:  Sheila S David; Valerie L O'Shea; Sucharita Kundu
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

4.  Structural investigation of a viral ortholog of human NEIL2/3 DNA glycosylases.

Authors:  Aishwarya Prakash; Brian E Eckenroth; April M Averill; Kayo Imamura; Susan S Wallace; Sylvie Doublié
Journal:  DNA Repair (Amst)       Date:  2013-10-10

Review 5.  DNA glycosylases search for and remove oxidized DNA bases.

Authors:  Susan S Wallace
Journal:  Environ Mol Mutagen       Date:  2013-10-07       Impact factor: 3.216

6.  Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair.

Authors:  Chenxu Zhu; Lining Lu; Jun Zhang; Zongwei Yue; Jinghui Song; Shuai Zong; Menghao Liu; Olivia Stovicek; Yi Qin Gao; Chengqi Yi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-27       Impact factor: 11.205

Review 7.  Insights into the glycosylase search for damage from single-molecule fluorescence microscopy.

Authors:  Andrea J Lee; David M Warshaw; Susan S Wallace
Journal:  DNA Repair (Amst)       Date:  2014-02-20

8.  Rad5 coordinates translesion DNA synthesis pathway by recognizing specific DNA structures in saccharomyces cerevisiae.

Authors:  Qifu Fan; Xin Xu; Xi Zhao; Qian Wang; Wei Xiao; Ying Guo; Yu V Fu
Journal:  Curr Genet       Date:  2018-02-02       Impact factor: 3.886

9.  Non-specific DNA binding interferes with the efficient excision of oxidative lesions from chromatin by the human DNA glycosylase, NEIL1.

Authors:  Ian D Odell; Kheng Newick; Nicholas H Heintz; Susan S Wallace; David S Pederson
Journal:  DNA Repair (Amst)       Date:  2009-12-11

10.  Analysis of an anomalous mutant of MutM DNA glycosylase leads to new insights into the catalytic mechanism.

Authors:  Kwangho Nam; Gregory L Verdine; Martin Karplus
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

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