Literature DB >> 15101576

Impact of Ice Ages on the genetic structure of trees and shrubs.

Martin Lascoux1, Anna E Palmé, Rachid Cheddadi, Robert G Latta.   

Abstract

Data on the genetic structure of tree and shrub populations on the continental scale have accumulated dramatically over the past decade. However, our ability to make inferences on the impact of the last ice age still depends crucially on the availability of informative palaeoecological data. This is well illustrated by the results from a recent project, during which new pollen fossil maps were established and the variation in chloroplast DNA was studied in 22 European species of trees and shrubs. Species exhibit very different levels of genetic variation between and within populations, and obviously went through very different histories after Ice Ages. However, when palaeoecological data are non-informative, inferences on past history are difficult to draw from entirely genetic data. On the other hand, as illustrated by a study in ponderosa pine, when we can infer the species' history with some certainty, coalescent simulations can be used and new hypotheses can be tested.

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Year:  2004        PMID: 15101576      PMCID: PMC1693322          DOI: 10.1098/rstb.2003.1390

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  17 in total

Review 1.  Range shifts and adaptive responses to Quaternary climate change.

Authors:  M B Davis; R G Shaw
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

Review 2.  The genetic legacy of the Quaternary ice ages.

Authors:  G Hewitt
Journal:  Nature       Date:  2000-06-22       Impact factor: 49.962

3.  Predicting nuclear gene coalescence from mitochondrial data: the three-times rule.

Authors:  S R Palumbi; F Cipriano; M P Hare
Journal:  Evolution       Date:  2001-05       Impact factor: 3.694

4.  Stochasticity overrules the "three-times rule": genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA.

Authors:  Richard R Hudson; Michael Turelli
Journal:  Evolution       Date:  2003-01       Impact factor: 3.694

5.  Glacial refugia: hotspots but not melting pots of genetic diversity.

Authors:  Rémy J Petit; Itziar Aguinagalde; Jacques-Louis de Beaulieu; Christiane Bittkau; Simon Brewer; Rachid Cheddadi; Richard Ennos; Silvia Fineschi; Delphine Grivet; Martin Lascoux; Aparajita Mohanty; Gerhard Müller-Starck; Brigitte Demesure-Musch; Anna Palmé; Juan Pedro Martín; Sarah Rendell; Giovanni G Vendramin
Journal:  Science       Date:  2003-06-06       Impact factor: 47.728

6.  Chloroplast DNA diversity in Calluna vulgaris (heather) populations in Europe.

Authors:  S Rendell; R A Ennos
Journal:  Mol Ecol       Date:  2002-01       Impact factor: 6.185

Review 7.  Evidence for population growth in humans is confounded by fine-scale population structure.

Authors:  Susan E Ptak; Molly Przeworski
Journal:  Trends Genet       Date:  2002-11       Impact factor: 11.639

8.  DNA from bird-dispersed seed and wind-disseminated pollen provides insights into postglacial colonization and population genetic structure of whitebark pine (Pinus albicaulis).

Authors:  B A Richardson; S J Brunsfeld; N B Klopfenstein
Journal:  Mol Ecol       Date:  2002-02       Impact factor: 6.185

9.  Postglacial recolonization and cpDNA variation of silver birch, Betula pendula.

Authors:  A E Palmé; Q Su; A Rautenberg; F Manni; M Lascoux
Journal:  Mol Ecol       Date:  2003-01       Impact factor: 6.185

Review 10.  Applications of selective neutrality tests to molecular ecology.

Authors:  Michael J Ford
Journal:  Mol Ecol       Date:  2002-08       Impact factor: 6.185

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  16 in total

Review 1.  Continuing the debate on the role of Quaternary environmental change for macroevolution.

Authors:  K D Bennett
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-02-29       Impact factor: 6.237

2.  The role of Quaternary environmental change in plant macroevolution: the exception or the rule?

Authors:  Katherine J Willis; Karl J Niklas
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-02-29       Impact factor: 6.237

3.  DNA fingerprinting in botany: past, present, future.

Authors:  Hilde Nybom; Kurt Weising; Björn Rotter
Journal:  Investig Genet       Date:  2014-01-03

4.  Nuclear DNA microsatellites reveal genetic variation but a lack of phylogeographical structure in an endangered species, Fraxinus mandshurica, across North-east China.

Authors:  Li-Jiang Hu; Kentaro Uchiyama; Hai-Long Shen; Yoko Saito; Yoshiaki Tsuda; Yuji Ide
Journal:  Ann Bot       Date:  2008-05-12       Impact factor: 4.357

5.  Phylogeography of Japanese horse chestnut (Aesculus turbinata) in the Japanese Archipelago based on chloroplast DNA haplotypes.

Authors:  Kanako Sugahara; Yuko Kaneko; Satoshi Ito; Keisuke Yamanaka; Hitoshi Sakio; Kazuhiko Hoshizaki; Wajiro Suzuki; Norikazu Yamanaka; Hiroaki Setoguchi
Journal:  J Plant Res       Date:  2010-06-12       Impact factor: 2.629

6.  Chloroplast DNA phylogeography of Betula maximowicziana, a long-lived pioneer tree species and noble hardwood in Japan.

Authors:  Yoshiaki Tsuda; Yuji Ide
Journal:  J Plant Res       Date:  2009-12-18       Impact factor: 2.629

7.  Genetic structure of Sakhalin spruce (Picea glehnii) in northern Japan and adjacent regions revealed by nuclear microsatellites and mitochondrial gene sequences.

Authors:  Mineaki Aizawa; Hiroshi Yoshimaru; Makoto Takahashi; Takayuki Kawahara; Hisashi Sugita; Hideyuki Saito; Renat N Sabirov
Journal:  J Plant Res       Date:  2014-11-25       Impact factor: 2.629

8.  Phylogeography of the Korean pine (Pinus koraiensis) in northeast Asia: inferences from organelle gene sequences.

Authors:  Mineaki Aizawa; Zin-Suh Kim; Hiroshi Yoshimaru
Journal:  J Plant Res       Date:  2012-03-30       Impact factor: 2.629

9.  Phylogeography of Arcterica nana (Ericaceae) suggests another range expansion history of Japanese alpine plants.

Authors:  Hajime Ikeda; Hiroaki Setoguchi
Journal:  J Plant Res       Date:  2006-08-19       Impact factor: 2.629

10.  Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch.

Authors:  Jarkko Salojärvi; Olli-Pekka Smolander; Kaisa Nieminen; Sitaram Rajaraman; Omid Safronov; Pezhman Safdari; Airi Lamminmäki; Juha Immanen; Tianying Lan; Jaakko Tanskanen; Pasi Rastas; Ali Amiryousefi; Balamuralikrishna Jayaprakash; Juhana I Kammonen; Risto Hagqvist; Gugan Eswaran; Viivi Helena Ahonen; Juan Alonso Serra; Fred O Asiegbu; Juan de Dios Barajas-Lopez; Daniel Blande; Olga Blokhina; Tiina Blomster; Suvi Broholm; Mikael Brosché; Fuqiang Cui; Chris Dardick; Sanna E Ehonen; Paula Elomaa; Sacha Escamez; Kurt V Fagerstedt; Hiroaki Fujii; Adrien Gauthier; Peter J Gollan; Pauliina Halimaa; Pekka I Heino; Kristiina Himanen; Courtney Hollender; Saijaliisa Kangasjärvi; Leila Kauppinen; Colin T Kelleher; Sari Kontunen-Soppela; J Patrik Koskinen; Andriy Kovalchuk; Sirpa O Kärenlampi; Anna K Kärkönen; Kean-Jin Lim; Johanna Leppälä; Lee Macpherson; Juha Mikola; Katriina Mouhu; Ari Pekka Mähönen; Ülo Niinemets; Elina Oksanen; Kirk Overmyer; E Tapio Palva; Leila Pazouki; Ville Pennanen; Tuula Puhakainen; Péter Poczai; Boy J H M Possen; Matleena Punkkinen; Moona M Rahikainen; Matti Rousi; Raili Ruonala; Christiaan van der Schoot; Alexey Shapiguzov; Maija Sierla; Timo P Sipilä; Suvi Sutela; Teemu H Teeri; Arja I Tervahauta; Aleksia Vaattovaara; Jorma Vahala; Lidia Vetchinnikova; Annikki Welling; Michael Wrzaczek; Enjun Xu; Lars G Paulin; Alan H Schulman; Martin Lascoux; Victor A Albert; Petri Auvinen; Ykä Helariutta; Jaakko Kangasjärvi
Journal:  Nat Genet       Date:  2017-05-08       Impact factor: 38.330

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