Literature DB >> 16924564

Phylogeography of Arcterica nana (Ericaceae) suggests another range expansion history of Japanese alpine plants.

Hajime Ikeda1, Hiroaki Setoguchi.   

Abstract

We conducted a phylogeographic study on the alpine plant Arcterica nana based on haplotypes of chloroplast DNA. Using a sequence of approximately 1,071 bp of intergenic spacers of chloroplast DNA (trnT-L, psbB-psbF), we detected 13 haplotypes among 193 individuals sampled from 22 populations. Two dominant haplotypes were distributed over the entire range of this species in Japan, and we found several local private haplotypes. An analysis of molecular variance (AMOVA) indicated no geographic structure within the haplotype distribution. In addition, the genetic distance was not related to its corresponding geographic distance (Mantel test: r=-0.049, P=0.66), indicating a homogeneous geographic structure throughout the entire distribution range in the Japanese archipelago. The most parsimonious explanation for this geographic structure is that A. nana spread across its extant distribution range in the Japanese archipelago through a recent range expansion event. However, this pattern is inconsistent with the previous phylogeography of Japanese alpine plants, which reveals that haplotypes in central Honshu are differentiated from those in more northern regions. Arcterica nana may have experienced a different history from other alpine plants, suggesting that the history of Japanese alpine flora may include at least two different geographic radiation patterns.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16924564     DOI: 10.1007/s10265-006-0012-9

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  21 in total

Review 1.  The genetic legacy of the Quaternary ice ages.

Authors:  G Hewitt
Journal:  Nature       Date:  2000-06-22       Impact factor: 49.962

2.  Molecular evidence for glacial refugia of mountain plants in the European Alps.

Authors:  P Schönswetter; I Stehlik; R Holderegger; A Tribsch
Journal:  Mol Ecol       Date:  2005-10       Impact factor: 6.185

3.  Glacial refugia: hotspots but not melting pots of genetic diversity.

Authors:  Rémy J Petit; Itziar Aguinagalde; Jacques-Louis de Beaulieu; Christiane Bittkau; Simon Brewer; Rachid Cheddadi; Richard Ennos; Silvia Fineschi; Delphine Grivet; Martin Lascoux; Aparajita Mohanty; Gerhard Müller-Starck; Brigitte Demesure-Musch; Anna Palmé; Juan Pedro Martín; Sarah Rendell; Giovanni G Vendramin
Journal:  Science       Date:  2003-06-06       Impact factor: 47.728

4.  Estimation, variance and optimal sampling of gene diversity : I. Haploid locus.

Authors:  O Pons; R J Petit
Journal:  Theor Appl Genet       Date:  1995-03       Impact factor: 5.699

5.  Comparative phylogeography and postglacial colonization routes in Europe.

Authors:  P Taberlet; L Fumagalli; A G Wust-Saucy; J F Cosson
Journal:  Mol Ecol       Date:  1998-04       Impact factor: 6.185

6.  Measuring and testing genetic differentiation with ordered versus unordered alleles.

Authors:  O Pons; R J Petit
Journal:  Genetics       Date:  1996-11       Impact factor: 4.562

7.  Glacial history of the alpine herb Rumex Nivalis (Polygonaceae): a comparison of common phylogeographic methods with nested clade analysis.

Authors:  Ivana Stehlik
Journal:  Am J Bot       Date:  2002-12       Impact factor: 3.844

8.  Population genetic analysis of European Prunus spinosa (Rosaceae) using chloroplast DNA markers.

Authors:  Aparajita Mohanty; Juan Pedro Martín; Itziar Aguinagalde
Journal:  Am J Bot       Date:  2002-08       Impact factor: 3.844

9.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

10.  Postglacial recolonization and cpDNA variation of silver birch, Betula pendula.

Authors:  A E Palmé; Q Su; A Rautenberg; F Manni; M Lascoux
Journal:  Mol Ecol       Date:  2003-01       Impact factor: 6.185

View more
  6 in total

1.  Molecular evolution of cryptochrome genes and the evolutionary manner of photoreceptor genes in Cardamine nipponica (Brassicaceae).

Authors:  Hajime Ikeda; Noriyuki Fujii; Hiroaki Setoguchi
Journal:  J Plant Res       Date:  2010-06-19       Impact factor: 2.629

2.  Molecular evolution of phytochromes in Cardamine nipponica (Brassicaceae) suggests the involvement of PHYE in local adaptation.

Authors:  Hajime Ikeda; Noriyuki Fujii; Hiroaki Setoguchi
Journal:  Genetics       Date:  2009-04-10       Impact factor: 4.562

3.  The homogenous genetic structure and inferred unique history of range shifts during the Pleistocene climatic oscillations of Arcterica nana (Maxim.) Makino (Ericaceae).

Authors:  Hajime Ikeda; Hiroaki Setoguchi
Journal:  J Plant Res       Date:  2009-01-17       Impact factor: 2.629

Review 4.  Decades-long phylogeographic issues: complex historical processes and ecological factors on genetic structure of alpine plants in the Japanese Archipelago.

Authors:  Hajime Ikeda
Journal:  J Plant Res       Date:  2022-02-15       Impact factor: 2.629

5.  Comparative phylogeographic study of Hosta sieboldiana and Hosta albomarginata (Asparagaceae) in Japan.

Authors:  Sangryong Lee; Masayuki Maki
Journal:  Ecol Evol       Date:  2013-10-31       Impact factor: 2.912

6.  Multilocus Analyses Reveal Postglacial Demographic Shrinkage of Juniperus morrisonicola (Cupressaceae), a Dominant Alpine Species in Taiwan.

Authors:  Chi-Chun Huang; Tsai-Wen Hsu; Hao-Ven Wang; Zin-Huang Liu; Yi-Yen Chen; Chi-Te Chiu; Chao-Li Huang; Kuo-Hsiang Hung; Tzen-Yuh Chiang
Journal:  PLoS One       Date:  2016-08-25       Impact factor: 3.240

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.