Literature DB >> 15095870

Mechanism of thermostabilization in a designed cold shock protein with optimized surface electrostatic interactions.

George I Makhatadze1, Vakhtang V Loladze, Alexey V Gribenko, Maria M Lopez.   

Abstract

Using computational and sequence analysis of bacterial cold shock proteins, we designed a protein (CspB-TB) that has the core residues of mesophilic protein from Bacillus subtilis(CspB-Bs) and altered distribution of surface charged residues. This designed protein was characterized by circular dichroism spectroscopy, and found to have secondary and tertiary structure similar to that of CspB-Bs. The activity of the CspB-TB protein as measured by the affinity to a single-stranded DNA (ssDNA) template at 25 degrees C is somewhat higher than that of CspB-Bs. Furthermore, the decrease in the apparent binding constant to ssDNA upon increase in temperature is much more pronounced for CspB-Bs than for CspB-TB. Temperature-induced unfolding (as monitored by differential scanning calorimetry and circular dichroism spectroscopy) and urea-induced unfolding experiments were used to compare the stabilities of CspB-Bs and CspB-TB. It was found that CspB-TB is approximately 20 degrees C more thermostable than CspB-Bs. The thermostabilization of CspB-TB relative to CspB-Bs is achieved by decrease in the enthalpy and entropy of unfolding without affecting their temperature dependencies, i.e. these proteins have similar heat capacity changes upon unfolding. These changes in the thermodynamic parameters result in the global stability function, i.e. Gibbs energy, deltaG(T), that is shifted to higher temperatures with only small changes in the maximum stability. Such a mechanism of thermostabilization, although predicted from the basic thermodynamic considerations, has never been identified experimentally.

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Year:  2004        PMID: 15095870     DOI: 10.1016/j.jmb.2003.12.058

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  17 in total

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Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

3.  Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge charge interactions.

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Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

4.  Rational stabilization of enzymes by computational redesign of surface charge-charge interactions.

Authors:  Alexey V Gribenko; Mayank M Patel; Jiajing Liu; Scott A McCallum; Chunyu Wang; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-05       Impact factor: 11.205

5.  A method to rationally increase protein stability based on the charge-charge interaction, with application to lipase LipK107.

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Journal:  Protein Sci       Date:  2013-11-22       Impact factor: 6.725

6.  Modulation of folding energy landscape by charge-charge interactions: linking experiments with computational modeling.

Authors:  Franco O Tzul; Katrina L Schweiker; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-06       Impact factor: 11.205

7.  Impacts of the charged residues mutation S48E/N62H on the thermostability and unfolding behavior of cold shock protein: insights from molecular dynamics simulation with Gō model.

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Journal:  J Mol Model       Date:  2016-03-28       Impact factor: 1.810

8.  Electrostatic effects on the folding stability of FKBP12.

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9.  Effects of pH and Salt Concentration on Stability of a Protein G Variant Using Coarse-Grained Models.

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Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

10.  Predicting the melting point of human C-type lysozyme mutants.

Authors:  Deeptak Verma; Donald J Jacobs; Dennis R Livesay
Journal:  Curr Protein Pept Sci       Date:  2010-11       Impact factor: 3.272

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