Literature DB >> 1508690

An ultraviolet light-induced crosslink in yeast tRNA(Phe).

L S Behlen1, J R Sampson, O C Uhlenbeck.   

Abstract

The irradiation of native or unmodified yeast tRNA(Phe) by short wavelength UV light (260 nM) results in an intramolecular crosslink that has been mapped to occur between C48 in the variable loop and U59 in the T loop. Photo-reversibility of the crosslink and the absence of fluorescent photo adducts suggest that the crosslink product is a cytidine-uridine cyclobutane dimer. This is consistent with the relative geometries of C48 and U59 in the crystal structure of yeast tRNA(Phe). Evaluation of the crosslinking efficiency of the mutants of tRNA(Phe) indicates that the reaction depends on the correct tertiary structure of the RNA.

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Year:  1992        PMID： 1508690      PMCID： PMC334087          DOI： 10.1093/nar/20.15.4055

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  26 in total

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Authors:  A Favre; M Yaniv
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2.  In vitro selection of RNAs that undergo autolytic cleavage with Pb2+.

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Authors:  W D Downs; T R Cech
Journal:  Biochemistry       Date:  1990-06-12       Impact factor: 3.162

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Authors:  W Hauswirth; S Y Wang
Journal:  Photochem Photobiol       Date:  1977-02       Impact factor: 3.421

5.  Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro.

Authors:  J R Sampson; O C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  1988-02       Impact factor: 11.205

6.  Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA.

Authors:  A D Branch; B J Benenfeld; H D Robertson
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

7.  Pyrimidine adduct fluorescence in UV irradiated nucleic acids.

Authors:  W Hauswirth; S Y Wang
Journal:  Biochem Biophys Res Commun       Date:  1973-04-02       Impact factor: 3.575

8.  Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA.

Authors:  R S Brown; J C Dewan; A Klug
Journal:  Biochemistry       Date:  1985-08-27       Impact factor: 3.162

9.  Evidence for pyrimidine-pyrimidine cyclobutane dimer formation in the covalent cross-linking between transfer ribonucleic acid and 16S ribonucleic acid at the ribosomal P site.

Authors:  J Ofengand; R Liou
Journal:  Biochemistry       Date:  1980-10-14       Impact factor: 3.162

10.  Investigation of the tertiary folding of Escherichia coli 16S RNA by in situ intra-RNA cross-linking within 30S ribosomal subunits.

Authors:  J Atmadja; R Brimacombe; H Blöcker; R Frank
Journal:  Nucleic Acids Res       Date:  1985-10-11       Impact factor: 16.971
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  17 in total

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Authors:  Erich G Chapman; Victoria J DeRose
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2.  Evidence for the existence of the loop E motif of Potato spindle tuber viroid in vivo.

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Journal:  J Virol       Date:  2006-11-29       Impact factor: 5.103

3.  In vivo identification of ribonucleoprotein-RNA interactions.

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4.  A counterintuitive Mg2+-dependent and modification-assisted functional folding of mitochondrial tRNAs.

Authors:  Christopher I Jones; Angela C Spencer; Jennifer L Hsu; Linda L Spremulli; Susan A Martinis; Michele DeRider; Paul F Agris
Journal:  J Mol Biol       Date:  2006-07-27       Impact factor: 5.469

5.  Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking.

Authors:  Wayne Huggins; Tatjana Shapkina; Paul Wollenzien
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

6.  Rapid cross-linking of an RNA internal loop by the anticancer drug cisplatin.

Authors:  Alethia A Hostetter; Erich G Chapman; Victoria J DeRose
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

7.  Probing structural elements in RNA using engineered disulfide cross-links.

Authors:  E J Maglott; G D Glick
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

8.  T box RNA decodes both the information content and geometry of tRNA to affect gene expression.

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9.  Replacement of RNA hairpins by in vitro selected tetranucleotides.

Authors:  B Dichtl; T Pan; A B DiRenzo; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1993-02-11       Impact factor: 16.971

10.  The crystal structure of unmodified tRNAPhe from Escherichia coli.

Authors:  Robert T Byrne; Andrey L Konevega; Marina V Rodnina; Alfred A Antson
Journal:  Nucleic Acids Res       Date:  2010-03-04       Impact factor: 16.971
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