Literature DB >> 1508683

Atomic force microscopy of reovirus dsRNA: a routine technique for length measurements.

Y L Lyubchenko1, B L Jacobs, S M Lindsay.   

Abstract

Atomic force microscopy (AFM) was used to image reovirus double stranded RNA (dsRNA) deposited from diluted buffer solution onto a chemically treated mica surface. This procedure allows AFM images of dsRNA molecules to be obtained with a quality close to that obtained with conventional electron microscopy. The length of the molecules were measured directly on a computer display using the digitally acquired images. The lengths of the molecules varied between 0.2 and 1.8 microns. Statistical analysis showed a multimodal distribution with clear maxima at 0.4, 0.65 and 1.05 microns. These data are in a good agreement with those obtained by electron microscopy and gel electrophoresis.

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Year:  1992        PMID: 1508683      PMCID: PMC334076          DOI: 10.1093/nar/20.15.3983

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  9 in total

1.  ELECTRON MICROSCOPE STUDIES ON REOVIRUS RNA.

Authors:  P J GOMATOS; W STOECKENIUS
Journal:  Proc Natl Acad Sci U S A       Date:  1964-12       Impact factor: 11.205

2.  Circular DNA molecules imaged in air by scanning force microscopy.

Authors:  C Bustamante; J Vesenka; C L Tang; W Rees; M Guthold; R Keller
Journal:  Biochemistry       Date:  1992-01-14       Impact factor: 3.162

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Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-03       Impact factor: 9.161

4.  Imaging and nanodissection of individual supercoiled plasmids by atomic force microscopy.

Authors:  E Henderson
Journal:  Nucleic Acids Res       Date:  1992-02-11       Impact factor: 16.971

5.  Genome RNAs and polypeptides of reovirus serotypes 1, 2, and 3.

Authors:  R F Ramig; R K Cross; B N Fields
Journal:  J Virol       Date:  1977-06       Impact factor: 5.103

6.  Reproducible imaging and dissection of plasmid DNA under liquid with the atomic force microscope.

Authors:  H G Hansma; J Vesenka; C Siegerist; G Kelderman; H Morrett; R L Sinsheimer; V Elings; C Bustamante; P K Hansma
Journal:  Science       Date:  1992-05-22       Impact factor: 47.728

7.  Imaging crystals, polymers, and processes in water with the atomic force microscope.

Authors:  B Drake; C B Prater; A L Weisenhorn; S A Gould; T R Albrecht; C F Quate; D S Cannell; H G Hansma; P K Hansma
Journal:  Science       Date:  1989-03-24       Impact factor: 47.728

8.  Electron microscopy of RNA strands released from individual Reovirus particles.

Authors:  C Vasquez; A K Kleinschmidt
Journal:  J Mol Biol       Date:  1968-05-28       Impact factor: 5.469

9.  Separation of ten reovirus genome segments by polyacrylamide gel electrophoresis.

Authors:  A J Shatkin; J D Sipe; P Loh
Journal:  J Virol       Date:  1968-10       Impact factor: 5.103

  9 in total
  10 in total

1.  Imaging of single hairpin ribozymes in solution by atomic force microscopy.

Authors:  M J Fay; N G Walter; J M Burke
Journal:  RNA       Date:  2001-06       Impact factor: 4.942

2.  Scanning force microscopy studies of X-ray-induced double-strand breaks in plasmid DNA.

Authors:  M Brezeanu; F Träger; F Hubenthal
Journal:  J Biol Phys       Date:  2009-02-26       Impact factor: 1.365

Review 3.  Potential role of atomic force microscopy in systems biology.

Authors:  Srinivasan Ramachandran; Fernando Teran Arce; Ratnesh Lal
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-07-15

4.  Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces.

Authors:  Y L Lyubchenko; P I Oden; D Lampner; S M Lindsay; K A Dunker
Journal:  Nucleic Acids Res       Date:  1993-03-11       Impact factor: 16.971

5.  Colloidal gold particles as an incompressible atomic force microscope imaging standard for assessing the compressibility of biomolecules.

Authors:  J Vesenka; S Manne; R Giberson; T Marsh; E Henderson
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

6.  Structures of large T antigen at the origin of SV40 DNA replication by atomic force microscopy.

Authors:  I A Mastrangelo; M Bezanilla; P K Hansma; P V Hough; H G Hansma
Journal:  Biophys J       Date:  1994-02       Impact factor: 4.033

7.  Stretched DNA structures observed with atomic force microscopy.

Authors:  T Thundat; D P Allison; R J Warmack
Journal:  Nucleic Acids Res       Date:  1994-10-11       Impact factor: 16.971

Review 8.  Imaging of nucleic acids with atomic force microscopy.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko; Toshio Ando
Journal:  Methods       Date:  2011-02-16       Impact factor: 3.608

9.  Nanoscale Nucleosome Dynamics Assessed with Time-lapse AFM.

Authors:  Yuri L Lyubchenko
Journal:  Biophys Rev       Date:  2014-06-01

Review 10.  The Kinetoplast of Trypanosomatids: From Early Studies of Electron Microscopy to Recent Advances in Atomic Force Microscopy.

Authors:  Danielle Pereira Cavalcanti; Wanderley de Souza
Journal:  Scanning       Date:  2018-06-19       Impact factor: 1.932

  10 in total

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