Literature DB >> 15085933

Structural aspects of microRNA biogenesis.

Jacek Krol1, Wlodzimierz J Krzyzosiak.   

Abstract

One of the biggest surprises at the beginning of the 'post-genome era' was the discovery of numerous genes encoding microRNAs. They were found in genomes of such diverse organisms as Caenorhabditis elegans, Drosophila melanogaster, Arabidopsis thaliana, and Homo sapiens which implies their important role in multicellular life evolution. The number of microRNA genes is estimated to be nearly 1% of that of protein-coding genes. Their products, tiny RNAs, are thought to regulate gene expression during development, organogenesis, and very likely during many other processes, by hybridizing to their target mRNAs. The cellular functions of mRNAs that are regulated by microRNAs are only beginning to be revealed, and details of this regulation mechanism are still poorly understood. In this article we discuss the possible mechanisms of microRNA biogenesis with special emphasis on their structural aspects. We have focused on the factors and effects that may be responsible for the existing length differences between different microRNAs, and for the observed length heterogeneity within some individual microRNA species.

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Year:  2004        PMID: 15085933     DOI: 10.1080/15216540410001670142

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  10 in total

1.  Wilms Tumor Suppressor, WT1, Cooperates with MicroRNA-26a and MicroRNA-101 to Suppress Translation of the Polycomb Protein, EZH2, in Mesenchymal Stem Cells.

Authors:  Murielle M Akpa; Diana Iglesias; LeeLee Chu; Antonin Thiébaut; Ida Jentoft; Leah Hammond; Elena Torban; Paul R Goodyer
Journal:  J Biol Chem       Date:  2015-12-10       Impact factor: 5.157

2.  Rapid determination of RNA accessible sites by surface plasmon resonance detection of hybridization to DNA arrays.

Authors:  Joshua B Mandir; Matthew R Lockett; Margaret F Phillips; Hatim T Allawi; Victor I Lyamichev; Lloyd M Smith
Journal:  Anal Chem       Date:  2009-11-01       Impact factor: 6.986

3.  Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation.

Authors:  Vernell Williamson; Albert Kim; Bin Xie; G Omari McMichael; Yuan Gao; Vladimir Vladimirov
Journal:  Brief Bioinform       Date:  2012-03-24       Impact factor: 11.622

4.  Correlation between sequence conservation and structural thermodynamics of microRNA precursors from human, mouse, and chicken genomes.

Authors:  Ming Ni; Wenjie Shu; Xiaochen Bo; Shengqi Wang; Songgang Li
Journal:  BMC Evol Biol       Date:  2010-10-27       Impact factor: 3.260

Review 5.  MicroRNA and brain tumors: a cause and a cure?

Authors:  Saroj P Mathupala; Sandeep Mittal; Murali Guthikonda; Andrew E Sloan
Journal:  DNA Cell Biol       Date:  2007-05       Impact factor: 3.311

6.  Identification and conformational analysis of putative microRNAs in Maruca vitrata (Lepidoptera: Pyralidae).

Authors:  C Shruthi Sureshan; S K M Habeeb
Journal:  Appl Transl Genom       Date:  2015-10-25

Review 7.  MicroRNA: biological and computational perspective.

Authors:  Yong Kong; Jin Hua Han
Journal:  Genomics Proteomics Bioinformatics       Date:  2005-05       Impact factor: 7.691

8.  In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA.

Authors:  Wenjie Shu; Xiaochen Bo; Ming Ni; Zhiqiang Zheng; Shengqi Wang
Journal:  BMC Evol Biol       Date:  2007-11-13       Impact factor: 3.260

9.  A novel representation of RNA secondary structure based on element-contact graphs.

Authors:  Wenjie Shu; Xiaochen Bo; Zhiqiang Zheng; Shengqi Wang
Journal:  BMC Bioinformatics       Date:  2008-04-11       Impact factor: 3.169

10.  Pattern of microRNA expression associated with different stages of alcoholic liver disease in rat models.

Authors:  Yi-Peng Chen; Xi Jin; Mei Kong; You-Ming Li
Journal:  Mol Med Rep       Date:  2014-07-07       Impact factor: 2.952

  10 in total

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