Literature DB >> 15085179

Poly(A)-binding-protein-mediated regulation of hDcp2 decapping in vitro.

Richie Khanna1, Megerditch Kiledjian.   

Abstract

Regulation of mRNA decapping is a critical determinant for gene expression. We demonstrate that the poly(A) tail-mediated regulation of mRNA decapping observed in humans can be recapitulated in vitro by the cytoplasmic poly(A)-binding protein PABP through a direct and specific binding to the 5' end of capped mRNA. The specific association of PABP with the cap occurred only within the context of the RNA whereby a cap attached to an RNA moiety served as the high-affinity substrate but not the cap structure or RNA alone. Binding of PABP to the RNA 5' end required the presence of the cap and was accentuated by the N7 methyl moiety of the cap. Interestingly, conditions that enhanced hDcp2 decapping activity reduced the affinity of PABP for cap association and consequently its ability to inhibit decapping, suggestive of a regulated association of PABP with the cap. These observations reveal a novel direct involvement of human PABP in the stabilization of mRNA by protecting the 5' end from decapping.

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Year:  2004        PMID: 15085179      PMCID: PMC404327          DOI: 10.1038/sj.emboj.7600213

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  45 in total

Review 1.  The cap-to-tail guide to mRNA turnover.

Authors:  C J Wilusz; M Wormington; S W Peltz
Journal:  Nat Rev Mol Cell Biol       Date:  2001-04       Impact factor: 94.444

2.  Identification and characterization of proteins binding A + U-rich elements.

Authors:  G M Wilson; G Brewer
Journal:  Methods       Date:  1999-01       Impact factor: 3.608

3.  Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20.

Authors:  Y Ishigaki; X Li; G Serin; L E Maquat
Journal:  Cell       Date:  2001-09-07       Impact factor: 41.582

4.  mRNA decapping in yeast requires dissociation of the cap binding protein, eukaryotic translation initiation factor 4E.

Authors:  D C Schwartz; R Parker
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

5.  3'-Terminal RNA structures and poly(U) tracts inhibit initiation by a 3'-->5' exonuclease in vitro.

Authors:  L P Ford; J Wilusz
Journal:  Nucleic Acids Res       Date:  1999-02-15       Impact factor: 16.971

6.  Characterization of c-myc 3' to 5' mRNA decay activities in an in vitro system.

Authors:  G Brewer
Journal:  J Biol Chem       Date:  1998-12-25       Impact factor: 5.157

7.  The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motif.

Authors:  T Dunckley; R Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

8.  The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex.

Authors:  J S Anderson; R P Parker
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

9.  The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases.

Authors:  P Mitchell; E Petfalski; A Shevchenko; M Mann; D Tollervey
Journal:  Cell       Date:  1997-11-14       Impact factor: 41.582

10.  Circularization of mRNA by eukaryotic translation initiation factors.

Authors:  S E Wells; P E Hillner; R D Vale; A B Sachs
Journal:  Mol Cell       Date:  1998-07       Impact factor: 17.970

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  29 in total

1.  Functional analysis of mRNA scavenger decapping enzymes.

Authors:  Shin-Wu Liu; Xinfu Jiao; Hudan Liu; Meigang Gu; Christopher D Lima; Megerditch Kiledjian
Journal:  RNA       Date:  2004-07-23       Impact factor: 4.942

2.  Multiple mRNA decapping enzymes in mammalian cells.

Authors:  Man-Gen Song; You Li; Megerditch Kiledjian
Journal:  Mol Cell       Date:  2010-11-12       Impact factor: 17.970

3.  Processing bodies require RNA for assembly and contain nontranslating mRNAs.

Authors:  Daniela Teixeira; Ujwal Sheth; Marco A Valencia-Sanchez; Muriel Brengues; Roy Parker
Journal:  RNA       Date:  2005-02-09       Impact factor: 4.942

4.  The decapping activator Lsm1p-7p-Pat1p complex has the intrinsic ability to distinguish between oligoadenylated and polyadenylated RNAs.

Authors:  Ashis Chowdhury; Jaba Mukhopadhyay; Sundaresan Tharun
Journal:  RNA       Date:  2007-05-18       Impact factor: 4.942

5.  Mutations in the Saccharomyces cerevisiae LSM1 gene that affect mRNA decapping and 3' end protection.

Authors:  Sundaresan Tharun; Denise Muhlrad; Ashis Chowdhury; Roy Parker
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

6.  DcpS scavenger decapping enzyme can modulate pre-mRNA splicing.

Authors:  Vincent Shen; Hudan Liu; Shin-Wu Liu; Xinfu Jiao; Megerditch Kiledjian
Journal:  RNA       Date:  2008-04-21       Impact factor: 4.942

7.  Evidence that poly(A) binding protein C1 binds nuclear pre-mRNA poly(A) tails.

Authors:  Nao Hosoda; Fabrice Lejeune; Lynne E Maquat
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

8.  Nuclear pre-mRNA decapping and 5' degradation in yeast require the Lsm2-8p complex.

Authors:  Joanna Kufel; Cecile Bousquet-Antonelli; Jean D Beggs; David Tollervey
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

9.  Vaccinia virus D10 protein has mRNA decapping activity, providing a mechanism for control of host and viral gene expression.

Authors:  Susan Parrish; Wolfgang Resch; Bernard Moss
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-05       Impact factor: 11.205

10.  Mutational analysis of a Dcp2-binding element reveals general enhancement of decapping by 5'-end stem-loop structures.

Authors:  You Li; Eric S Ho; Samuel I Gunderson; Megerditch Kiledjian
Journal:  Nucleic Acids Res       Date:  2009-02-20       Impact factor: 16.971

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