Literature DB >> 15081810

The crystal structure of a (-) gamma-lactamase from an Aureobacterium species reveals a tetrahedral intermediate in the active site.

Kirsty Line1, Michail N Isupov, Jennifer A Littlechild.   

Abstract

The structure of the recombinant (-) gamma-lactamase from an Aureobacterium species has been solved at 1.73A resolution in the cubic space group F23 with unit cell parameters a=b=c=240.6A. The trimeric enzyme has an alpha/beta hydrolase fold and closely resembles the cofactor free haloperoxidases. The structure has been solved in complex with a covalently bound ligand originating from the host cell and also in the unligated form. The associated density in the former structure has been interpreted as the two-ring ligand (3aR,7aS)-3a,4,7,7a-tetrahydro-benzo [1,3] dioxol-2-one which forms a tetrahedral complex with OG of the catalytic Ser98. Soaks of these crystals with the industrial substrate gamma-lactam or its structural analogue, norcamphor, result in the displacement of the ligand from the enzyme active site, thereby allowing determination of the unligated structure. The presence of the ligand in the active site protects the enzyme from serine hydrolase inhibitors. Cyclic ethylene carbonate, the first ring of the ligand, was shown to be a substrate of the enzyme.

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Year:  2004        PMID: 15081810     DOI: 10.1016/j.jmb.2004.03.001

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  14 in total

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Journal:  J Ind Microbiol Biotechnol       Date:  2018-10-23       Impact factor: 3.346

2.  Discovery of a novel (+)-γ-lactamase from Bradyrhizobium japonicum USDA 6 by rational genome mining.

Authors:  Shaozhou Zhu; Cuiyu Gong; Dawei Song; Shuaihua Gao; Guojun Zheng
Journal:  Appl Environ Microbiol       Date:  2012-08-10       Impact factor: 4.792

3.  Switching catalysis from hydrolysis to perhydrolysis in Pseudomonas fluorescens esterase.

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4.  How the Same Core Catalytic Machinery Catalyzes 17 Different Reactions: the Serine-Histidine-Aspartate Catalytic Triad of α/β-Hydrolase Fold Enzymes.

Authors:  Alissa Rauwerdink; Romas J Kazlauskas
Journal:  ACS Catal       Date:  2015-09-09       Impact factor: 13.084

5.  New structural motif for carboxylic acid perhydrolases.

Authors:  DeLu Tyler Yin; Vince M Purpero; Ryota Fujii; Qing Jing; Romas J Kazlauskas
Journal:  Chemistry       Date:  2013-01-16       Impact factor: 5.236

6.  Deciphering the genetic determinants for aerobic nicotinic acid degradation: the nic cluster from Pseudomonas putida KT2440.

Authors:  José I Jiménez; Angeles Canales; Jesús Jiménez-Barbero; Krzysztof Ginalski; Leszek Rychlewski; José L García; Eduardo Díaz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-04       Impact factor: 11.205

7.  Facilitating the Evolution of Esterase Activity from a Promiscuous Enzyme (Mhg) with Catalytic Functions of Amide Hydrolysis and Carboxylic Acid Perhydrolysis by Engineering the Substrate Entrance Tunnel.

Authors:  Xiaodan Yan; Jianjun Wang; Yu Sun; Junge Zhu; Sheng Wu
Journal:  Appl Environ Microbiol       Date:  2016-10-27       Impact factor: 4.792

8.  Cloning of a novel pyrethroid-hydrolyzing carboxylesterase gene from Sphingobium sp. strain JZ-1 and characterization of the gene product.

Authors:  Bao-zhan Wang; Peng Guo; Bao-jian Hang; Lian Li; Jian He; Shun-peng Li
Journal:  Appl Environ Microbiol       Date:  2009-07-06       Impact factor: 4.792

9.  Structural and biochemical characterisation of Archaeoglobus fulgidus esterase reveals a bound CoA molecule in the vicinity of the active site.

Authors:  Christopher Sayer; William Finnigan; Michail N Isupov; Mark Levisson; Servé W M Kengen; John van der Oost; Nicholas J Harmer; Jennifer A Littlechild
Journal:  Sci Rep       Date:  2016-05-10       Impact factor: 4.379

10.  CBD binding domain fused γ-lactamase from Sulfolobus solfataricus is an efficient catalyst for (-) γ-lactam production.

Authors:  Jianjun Wang; Junge Zhu; Cong Min; Sheng Wu
Journal:  BMC Biotechnol       Date:  2014-05-13       Impact factor: 2.563

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