Literature DB >> 15070392

Tryptophan chemical shift in peptides and proteins: a solid state carbon-13 nuclear magnetic resonance spectroscopic and quantum chemical investigation.

Haihong Sun1, Eric Oldfield.   

Abstract

We have obtained the carbon-13 nuclear magnetic resonance spectra of a series of tryptophan-containing peptides and model systems, together with their X-ray crystallographic structures, and used quantum chemical methods to predict the (13)C NMR shifts (or shieldings) of all nonprotonated aromatic carbons (C(gamma), C(delta 2) and C(epsilon 2). Overall, there is generally good accord between theory and experiment. The chemical shifts of Trp C(gamma) in several proteins, hen egg white lysozyme, horse myoglobin, horse heart cytochrome c, and four carbonmonoxyhemoglobins, are also well predicted. The overall Trp C(gamma) shift range seen in the peptides and proteins is 11.4 ppm, and individual shifts (or shieldings) are predicted with an rms error of approximately 1.4 ppm (R value = 0.86). Unlike C(alpha) and N(H) chemical shifts, which are primarily a function of the backbone phi,psi torsion angles, the Trp C(gamma) shifts are shown to be correlated with the side-chain torsion angles chi(1) and chi(2) and appear to arise, at least in part, from gamma-gauche interactions with the backbone C' and N(H) atoms. This work helps solve the problem of the chemical shift nonequivalences of nonprotonated aromatic carbons in proteins first identified over 30 years ago and opens up the possibility of using aromatic carbon chemical shift information in structure determination.

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Year:  2004        PMID: 15070392     DOI: 10.1021/ja030612u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  4 in total

1.  Liquid and Hydrogel Phases of PrPC Linked to Conformation Shifts and Triggered by Alzheimer's Amyloid-β Oligomers.

Authors:  Mikhail A Kostylev; Marcus D Tuttle; Suho Lee; Lauren E Klein; Hideyuki Takahashi; Timothy O Cox; Erik C Gunther; Kurt W Zilm; Stephen M Strittmatter
Journal:  Mol Cell       Date:  2018-10-25       Impact factor: 17.970

2.  Accurate ab initio prediction of NMR chemical shifts of nucleic acids and nucleic acids/protein complexes.

Authors:  Andrea Victora; Heiko M Möller; Thomas E Exner
Journal:  Nucleic Acids Res       Date:  2014-11-17       Impact factor: 16.971

3.  Modeling pH-Dependent NMR Chemical Shift Perturbations in Peptides.

Authors:  Efrosini Artikis; Charles L Brooks
Journal:  Biophys J       Date:  2019-06-12       Impact factor: 4.033

4.  Protein structure refinement using 13C alpha chemical shift tensors.

Authors:  Benjamin J Wylie; Charles D Schwieters; Eric Oldfield; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

  4 in total

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