Literature DB >> 15070336

Cytochrome P450: an investigation of the Mössbauer spectra of a reaction intermediate and an Fe(IV)[double bond]O model system.

Yong Zhang1, Eric Oldfield.   

Abstract

We have carried out a series of density functional theory (DFT) calculations to predict the 57Fe Mössbauer quadrupole splittings (DeltaEQ) and isomer shifts (deltaFe) for an Fe(IV)=O model compound ([Fe(O)(TMC)(NCCH3)](OTf)2, TMC = 1,4,8,11-tetramethyl-1,4,8,11-tetraazacyclotetradecane, OTf = CF3SO3-) as well as a cytochrome P450 reaction intermediate (P450-RI). The DFT predictions on the model compound are in almost exact agreement with experiment. The same DFT methods did not enable the prediction of the experimental DeltaEQ results for P450-RI when using the experimental protein crystal structure and seven different spin/charge/protonation state combinations, but did permit good predictions of both DeltaEQ and deltaFe when using a geometry optimized structure having a porphyrin dianion, a protonated cysteine, and S = 1 (the same as that found from previous ESR studies).

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15070336     DOI: 10.1021/ja030664j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Enzyme reactivation by hydrogen peroxide in heme-based tryptophan dioxygenase.

Authors:  Rong Fu; Rupal Gupta; Jiafeng Geng; Kednerlin Dornevil; Siming Wang; Yong Zhang; Michael P Hendrich; Aimin Liu
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

2.  A critical evaluation of DFT, including time-dependent DFT, applied to bioinorganic chemistry.

Authors:  Frank Neese
Journal:  J Biol Inorg Chem       Date:  2006-07-05       Impact factor: 3.358

Review 3.  Prolyl 4-hydroxylase activity-responsive transcription factors: from hydroxylation to gene expression and neuroprotection.

Authors:  Ambreena Siddiq; Leila R Aminova; Rajiv R Ratan
Journal:  Front Biosci       Date:  2008-01-01

4.  Inhibition of the Fe(4)S(4)-cluster-containing protein IspH (LytB): electron paramagnetic resonance, metallacycles, and mechanisms.

Authors:  Ke Wang; Weixue Wang; Joo-Hwan No; Yonghui Zhang; Yong Zhang; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2010-05-19       Impact factor: 15.419

5.  Synthesis, structures, spectroscopic and electrochemical properties of dinitrosyl iron complexes with bipyridine, terpyridine, and 1,10-phenathroline.

Authors:  Rongming Wang; Ximeng Wang; Eric B Sundberg; Phuongmei Nguyen; Gian Paola G Grant; Chaitali Sheth; Qiang Zhao; Steve Herron; Katherine A Kantardjieff; Lijuan Li
Journal:  Inorg Chem       Date:  2009-10-19       Impact factor: 5.165

6.  Iron Binding Site in a Global Regulator in Bacteria - Ferric Uptake Regulator (Fur) Protein: Structure, Mössbauer Properties, and Functional Implication.

Authors:  Joseph Katigbak; Yong Zhang
Journal:  J Phys Chem Lett       Date:  2012-11-14       Impact factor: 6.475

7.  Density functional theory calculations on the active site of biotin synthase: mechanism of S transfer from the Fe(2)S(2) cluster and the role of 1st and 2nd sphere residues.

Authors:  Atanu Rana; Subal Dey; Amita Agrawal; Abhishek Dey
Journal:  J Biol Inorg Chem       Date:  2015-09-14       Impact factor: 3.358

8.  Comparative calculation of EPR spectral parameters in [Mo(V)OX4]-, [Mo(V)OX5]2-, and [Mo(V)OX4(H2O)]- complexes.

Authors:  Ryan G Hadt; Victor N Nemykin; Joseph G Olsen; Partha Basu
Journal:  Phys Chem Chem Phys       Date:  2009-09-30       Impact factor: 3.676

Review 9.  Computational investigations of HNO in biology.

Authors:  Yong Zhang
Journal:  J Inorg Biochem       Date:  2012-10-05       Impact factor: 4.155

10.  NMR, IR/Raman, and structural properties in HNO and RNO (R = alkyl and aryl) metalloporphyrins with implication for the HNO-myoglobin complex.

Authors:  Yan Ling; Christopher Mills; Rebecca Weber; Liu Yang; Yong Zhang
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.