Literature DB >> 15066838

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems.

Ken Takai1, Hanako Oida, Yohey Suzuki, Hisako Hirayama, Satoshi Nakagawa, Takuro Nunoura, Fumio Inagaki, Kenneth H Nealson, Koki Horikoshi.   

Abstract

Distribution profiles of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems were mapped with culture-independent molecular techniques. Planktonic samples were obtained from the waters surrounding two geographically and geologically distinct hydrothermal systems, and the abundance of marine crenarchaeota group I was examined by 16S ribosomal DNA clone analysis, quantitative PCR, and whole-cell fluorescence in situ hybridization. A much higher proportion of marine crenarchaeota group I within the microbial community was detected in deep-sea hydrothermal environments than in normal deep and surface seawaters. The highest proportion was always obtained from the ambient seawater adjacent to hydrothermal emissions and chimneys but not from the hydrothermal plumes. These profiles were markedly different from the profiles of epsilon-Proteobacteria, which are abundant in the low temperatures of deep-sea hydrothermal environments.

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Year:  2004        PMID: 15066838      PMCID: PMC383094          DOI: 10.1128/AEM.70.4.2404-2413.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  40 in total

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Authors:  B L Maidak; J R Cole; T G Lilburn; C T Parker; P R Saxman; J M Stredwick; G M Garrity; B Li; G J Olsen; S Pramanik; T M Schmidt; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

Authors:  C Vetriani; H W Jannasch; B J MacGregor; D A Stahl; A L Reysenbach
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

3.  Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment.

Authors:  F Inagaki; K Takai; T Komatsu; T Kanamatsu; K Fujioka; K Horikoshi
Journal:  Extremophiles       Date:  2001-12       Impact factor: 2.395

4.  Distribution of archaea in a black smoker chimney structure.

Authors:  K Takai; T Komatsu; F Inagaki; K Horikoshi
Journal:  Appl Environ Microbiol       Date:  2001-08       Impact factor: 4.792

5.  Archaea in coastal marine environments.

Authors:  E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

6.  A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.

Authors:  C M Preston; K Y Wu; T F Molinski; E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

7.  Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells.

Authors:  S J Giovannoni; E F DeLong; G J Olsen; N R Pace
Journal:  J Bacteriol       Date:  1988-02       Impact factor: 3.490

8.  Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon.

Authors:  J L Stein; T L Marsh; K Y Wu; H Shizuya; E F DeLong
Journal:  J Bacteriol       Date:  1996-02       Impact factor: 3.490

9.  Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent.

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10.  Specific ribosomal DNA sequences from diverse environmental settings correlate with experimental contaminants.

Authors:  M A Tanner; B M Goebel; M A Dojka; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-08       Impact factor: 4.792

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  31 in total

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Authors:  Yukari Yoshida-Takashima; Takuro Nunoura; Hiromi Kazama; Takuroh Noguchi; Kazuhiro Inoue; Hironori Akashi; Toshiro Yamanaka; Tomohiro Toki; Masahiro Yamamoto; Yasuo Furushima; Yuichiro Ueno; Hiroyuki Yamamoto; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2011-12-30       Impact factor: 4.792

2.  The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.

Authors:  Ryan A Lesniewski; Sunit Jain; Karthik Anantharaman; Patrick D Schloss; Gregory J Dick
Journal:  ISME J       Date:  2012-06-14       Impact factor: 10.302

3.  Characteristics of the cultivable bacteria from sediments associated with two deep-sea hydrothermal vents in Okinawa Trough.

Authors:  Qing-lei Sun; Ming-qing Wang; Li Sun
Journal:  World J Microbiol Biotechnol       Date:  2015-09-26       Impact factor: 3.312

4.  Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes.

Authors:  Fumio Inagaki; Urumu Tsunogai; Masae Suzuki; Ayako Kosaka; Hideaki Machiyama; Ken Takai; Takuro Nunoura; Kenneth H Nealson; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

5.  Phylogenetic analysis of Archaea in the deep-sea sediments of west Pacific Warm Pool.

Authors:  Peng Wang; Xiang Xiao; Fengping Wang
Journal:  Extremophiles       Date:  2005-03-11       Impact factor: 2.395

6.  Enzymatic and genetic characterization of carbon and energy metabolisms by deep-sea hydrothermal chemolithoautotrophic isolates of Epsilonproteobacteria.

Authors:  Ken Takai; Barbara J Campbell; S Craig Cary; Masae Suzuki; Hanako Oida; Takuro Nunoura; Hisako Hirayama; Satoshi Nakagawa; Yohey Suzuki; Fumio Inagaki; Koki Horikoshi
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

7.  Biochemical characterization of DNA-binding proteins from Pyrobaculum aerophilum and Aeropyrum pernix.

Authors:  Christine D Hardy; Patrick K Martin
Journal:  Extremophiles       Date:  2007-12-07       Impact factor: 2.395

Review 8.  Microbial ecology of the dark ocean above, at, and below the seafloor.

Authors:  Beth N Orcutt; Jason B Sylvan; Nina J Knab; Katrina J Edwards
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

9.  Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes.

Authors:  Jean-Christophe Auguet; Natalya Nomokonova; Lluis Camarero; Emilio O Casamayor
Journal:  Appl Environ Microbiol       Date:  2011-01-14       Impact factor: 4.792

10.  Archaeal diversity and distribution along thermal and geochemical gradients in hydrothermal sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa trough.

Authors:  Takuro Nunoura; Hanako Oida; Miwako Nakaseama; Ayako Kosaka; Satoru B Ohkubo; Toru Kikuchi; Hiromi Kazama; Shoko Hosoi-Tanabe; Ko-Ichi Nakamura; Masataka Kinoshita; Hisako Hirayama; Fumio Inagaki; Urumu Tsunogai; Jun-Ichiro Ishibashi; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

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