Literature DB >> 15064297

Deconvolution of confocal images of dihydropyridine and ryanodine receptors in developing cardiomyocytes.

Franklin Sedarat1, Eric Lin, Edwin D W Moore, Glen F Tibbits.   

Abstract

Colocalization of dihydropyridine (DHPR) and ryanodine (RyR) receptors, a key determinant of Ca(2+)-induced Ca2+ release, was previously estimated in 3-, 6-, 10-, and 20-day-old rabbit ventricular myocytes by immunocytochemistry and confocal microscopy. We now report on the effects of deconvolution (using a maximum-likelihood estimation algorithm) on the calculation of colocalization indexes. Clusters of DHPR and RyR can be accurately represented as point sources of fluorescence, which enables a model of their relative distributions to be constructed using images of point spread functions to simulate their fluorescence inside a cell. This model was used to investigate the effects of deconvolution on colocalization as a function of separation distance. Deconvolution resulted in significant improvements in both axial and transverse resolutions, producing significant increases in clarity. Comparisons of intensity profiles (full-width half-maximum) pre- and postdeconvolution showed decreased dispersion of the fluorescent signal and a corresponding decrease in false colocalization as determined by fluorescence modeling. This hypothesis was extended to physiological data previously collected. The number of colocalized voxels was quantified after deconvolution, and the degree of colocalization of DHPR with RyR decreased significantly after deconvolution in all age groups: 3 days (62 +/- 2% before deconvolution, 43 +/- 3 after deconvolution) to 20 days old (79 +/- 1% before deconvolution, 63 +/- 2% after deconvolution). The data demonstrate that confocal images should be deconvolved before any quantitative analysis, such as colocalization index determination, to minimize the detrimental effects of out-of-focus light in coincident voxels.

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Year:  2004        PMID: 15064297     DOI: 10.1152/japplphysiol.00089.2004

Source DB:  PubMed          Journal:  J Appl Physiol (1985)        ISSN: 0161-7567


  11 in total

1.  Functional groups of ryanodine receptors in rat ventricular cells.

Authors:  V Lukyanenko; A Ziman; A Lukyanenko; V Salnikov; W J Lederer
Journal:  J Physiol       Date:  2007-07-12       Impact factor: 5.182

2.  Temperature acclimation has no effect on ryanodine receptor expression or subcellular localization in rainbow trout heart.

Authors:  Rikke Birkedal; Jennifer Christopher; Angela Thistlethwaite; Holly A Shiels
Journal:  J Comp Physiol B       Date:  2009-06-21       Impact factor: 2.200

Review 3.  Spatial quantitative analysis of fluorescently labeled nuclear structures: problems, methods, pitfalls.

Authors:  O Ronneberger; D Baddeley; F Scheipl; P J Verveer; H Burkhardt; C Cremer; L Fahrmeir; T Cremer; B Joffe
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

4.  Organization of ryanodine receptors, transverse tubules, and sodium-calcium exchanger in rat myocytes.

Authors:  Isuru D Jayasinghe; Mark B Cannell; Christian Soeller
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

5.  Real-time GPU-based 3D Deconvolution.

Authors:  Marc A Bruce; Manish J Butte
Journal:  Opt Express       Date:  2013-02-25       Impact factor: 3.894

6.  [Measurement of retinal thickness with the Heidelberg retina tomograph for patients with macular edema and healthy individuals].

Authors:  A Ackermann; L E Pillunat
Journal:  Ophthalmologe       Date:  2012-09       Impact factor: 1.059

7.  Quantitative 3D tracing of gene-delivery viral vectors in human cells and animal tissues.

Authors:  Ping-Jie Xiao; Chengwen Li; Aaron Neumann; R Jude Samulski
Journal:  Mol Ther       Date:  2011-11-22       Impact factor: 11.454

8.  Three-dimensional distribution of cardiac Na+-Ca2+ exchanger and ryanodine receptor during development.

Authors:  Pauline Dan; Eric Lin; Jingbo Huang; Perveen Biln; Glen F Tibbits
Journal:  Biophys J       Date:  2007-06-08       Impact factor: 4.033

Review 9.  Calcium and arrhythmogenesis.

Authors:  Henk E D J Ter Keurs; Penelope A Boyden
Journal:  Physiol Rev       Date:  2007-04       Impact factor: 37.312

10.  Cytoplasmic Prep1 interacts with 4EHP inhibiting Hoxb4 translation.

Authors:  J Carlos Villaescusa; Claudia Buratti; Dmitry Penkov; Lisa Mathiasen; Jesús Planagumà; Elisabetta Ferretti; Francesco Blasi
Journal:  PLoS One       Date:  2009-04-13       Impact factor: 3.240

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