Literature DB >> 15063651

Molecular simulations of diffusion and association in multimacromolecular systems.

Adrian H Elcock1.   

Abstract

Year:  2004        PMID: 15063651     DOI: 10.1016/S0076-6879(04)83008-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


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  13 in total

1.  Improvements to the APBS biomolecular solvation software suite.

Authors:  Elizabeth Jurrus; Dave Engel; Keith Star; Kyle Monson; Juan Brandi; Lisa E Felberg; David H Brookes; Leighton Wilson; Jiahui Chen; Karina Liles; Minju Chun; Peter Li; David W Gohara; Todd Dolinsky; Robert Konecny; David R Koes; Jens Erik Nielsen; Teresa Head-Gordon; Weihua Geng; Robert Krasny; Guo-Wei Wei; Michael J Holst; J Andrew McCammon; Nathan A Baker
Journal:  Protein Sci       Date:  2017-10-24       Impact factor: 6.725

2.  Investigating Intrinsically Disordered Proteins With Brownian Dynamics.

Authors:  Surl-Hee Ahn; Gary A Huber; J Andrew McCammon
Journal:  Front Mol Biosci       Date:  2022-06-08

3.  Cytoplasmic protein mobility in osmotically stressed Escherichia coli.

Authors:  Michael C Konopka; Kem A Sochacki; Benjamin P Bratton; Irina A Shkel; M Thomas Record; James C Weisshaar
Journal:  J Bacteriol       Date:  2008-10-24       Impact factor: 3.490

4.  Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm.

Authors:  Sean R McGuffee; Adrian H Elcock
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

Review 5.  Molecular dynamics: survey of methods for simulating the activity of proteins.

Authors:  Stewart A Adcock; J Andrew McCammon
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

6.  Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase.

Authors:  Christian Seitz; Lorenzo Casalino; Robert Konecny; Gary Huber; Rommie E Amaro; J Andrew McCammon
Journal:  Biophys J       Date:  2020-10-31       Impact factor: 4.033

7.  Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information.

Authors:  Anne Lopes; Sophie Sacquin-Mora; Viktoriya Dimitrova; Elodie Laine; Yann Ponty; Alessandra Carbone
Journal:  PLoS Comput Biol       Date:  2013-12-05       Impact factor: 4.475

Review 8.  Bridging scales through multiscale modeling: a case study on protein kinase A.

Authors:  Britton W Boras; Sophia P Hirakis; Lane W Votapka; Robert D Malmstrom; Rommie E Amaro; Andrew D McCulloch
Journal:  Front Physiol       Date:  2015-09-09       Impact factor: 4.566

9.  Large-scale molecular dynamics simulation: Effect of polarization on thrombin-ligand binding energy.

Authors:  Li L Duan; Guo Q Feng; Qing G Zhang
Journal:  Sci Rep       Date:  2016-08-10       Impact factor: 4.379

10.  Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning.

Authors:  Lane W Votapka; Rommie E Amaro
Journal:  PLoS Comput Biol       Date:  2015-10-27       Impact factor: 4.475

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