Literature DB >> 15063646

Ab initio protein folding using LINUS.

Rajgopal Srinivasan1, Patrick J Fleming, George D Rose.   

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Year:  2004        PMID: 15063646     DOI: 10.1016/S0076-6879(04)83003-9

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


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  14 in total

1.  Physical-chemical determinants of coil conformations in globular proteins.

Authors:  Lauren L Perskie; George D Rose
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

2.  A novel method reveals that solvent water favors polyproline II over beta-strand conformation in peptides and unfolded proteins: conditional hydrophobic accessible surface area (CHASA).

Authors:  Patrick J Fleming; Nicholas C Fitzkee; Mihaly Mezei; Rajgopal Srinivasan; George D Rose
Journal:  Protein Sci       Date:  2004-12-02       Impact factor: 6.725

3.  Building native protein conformation from highly approximate backbone torsion angles.

Authors:  Haipeng Gong; Patrick J Fleming; George D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-26       Impact factor: 11.205

4.  Two-stage folding of HP-35 from ab initio simulations.

Authors:  Hongxing Lei; Yong Duan
Journal:  J Mol Biol       Date:  2007-04-20       Impact factor: 5.469

5.  Electrostatic effects in unfolded staphylococcal nuclease.

Authors:  Nicholas C Fitzkee; Bertrand García-Moreno E
Journal:  Protein Sci       Date:  2008-02       Impact factor: 6.725

6.  Mimicking the folding pathway to improve homology-free protein structure prediction.

Authors:  Joe DeBartolo; Andrés Colubri; Abhishek K Jha; James E Fitzgerald; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

7.  Protein structure prediction enhanced with evolutionary diversity: SPEED.

Authors:  Joe DeBartolo; Glen Hocky; Michael Wilde; Jinbo Xu; Karl F Freed; Tobin R Sosnick
Journal:  Protein Sci       Date:  2010-03       Impact factor: 6.725

8.  De novo prediction of protein folding pathways and structure using the principle of sequential stabilization.

Authors:  Aashish N Adhikari; Karl F Freed; Tobin R Sosnick
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

9.  Hydrogen-bonded turns in proteins: the case for a recount.

Authors:  Nick Panasik; Patrick J Fleming; George D Rose
Journal:  Protein Sci       Date:  2005-11       Impact factor: 6.725

10.  Modeling the Early Stages of Phase Separation in Disordered Elastin-like Proteins.

Authors:  Yue Zhang; Valeria Zai-Rose; Cody J Price; Nicholas A Ezzell; Gene L Bidwell; John J Correia; Nicholas C Fitzkee
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

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