Literature DB >> 15062805

Conflicting phylogenies of balsaminoid families and the polytomy in Ericales: combining data in a Bayesian framework.

K Geuten1, E Smets, P Schols, Y-M Yuan, S Janssens, P Küpfer, N Pyck.   

Abstract

The balsaminoid Ericales, namely Balsaminaceae, Marcgraviaceae, Tetrameristaceae, and Pellicieraceae have been confidently placed at the base of Ericales, but the relations among these families have been resolved differently in recent analyses. Sister to this basal group is a large polytomy comprising all other families of Ericales, which is associated with short internodes. Because there are more than 13 kb of sequences for a large sampling of representatives, a thorough examination of the available data with novel methods seemed in place. Because of its computational speed, Bayesian phylogenetics allows for the use of parameter-rich models that can accommodate differences in the evolutionary process between partitions in a simultaneous analysis. In addition, there are recently proposed Bayesian strategies of assessing incongruence between partitions. We have applied these methods to the current problems in Ericales phylogeny, taking into account reported pitfalls in Bayesian analysis such as model selection uncertainty. Based on our results we infer several, previously unresolved relationships in the order Ericales. In balsaminoid families, we find that the closest relatives of Balsaminaceae are Marcgraviaceae. In the Ericales polytomy, we find strong support for Pentaphylacaceae sensu APG II as the sister group of Maesaceae. In addition, Symplocaceae receive a position as sister to Theaceae and these families form a monophyletic group together with Styracaceae-Diapensiaceae. At the base of this clade are Actinidiaceae and Clethraceae. The positions of Ebenaceae and Lecythidaceae remain uncertain.

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Year:  2004        PMID: 15062805     DOI: 10.1016/j.ympev.2003.09.014

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  10 in total

1.  Ancient genome duplications during the evolution of kiwifruit (Actinidia) and related Ericales.

Authors:  Tao Shi; Hongwen Huang; Michael S Barker
Journal:  Ann Bot       Date:  2010-06-24       Impact factor: 4.357

2.  Palynological variation in balsaminoid ericales. I. Marcgraviaceae.

Authors:  Frederic Lens; Stefan Dressler; Stefan Vinckier; Steven Janssens; Steven Dessein; Liesbeth van Evelghem; Erik Smets
Journal:  Ann Bot       Date:  2005-09-12       Impact factor: 4.357

3.  Palynological variation in Balsaminoid Ericales. II. Balsaminaceae, Tetrameristaceae, Pellicieraceae and general conclusions.

Authors:  Steven Janssens; Frederic Lens; Stefan Dressler; Koen Geuten; Erik Smets; Stefan Vinckier
Journal:  Ann Bot       Date:  2005-09-12       Impact factor: 4.357

4.  Evolution of fruit and seed characters in the Diervilla and Lonicera clades (Caprifoliaceae, Dipsacales).

Authors:  Bart Jacobs; Frederic Lens; Erik Smets
Journal:  Ann Bot       Date:  2009-06-05       Impact factor: 4.357

5.  Diversity and evolution of floral structure among early diverging lineages in the Ericales.

Authors:  Jürg Schönenberger; Maria von Balthazar; Kenneth J Sytsma
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-02-12       Impact factor: 6.237

6.  Evolution of the variable gene segments and recombination signal sequences of the human T-cell receptor alpha/delta locus.

Authors:  Marsha R Haynes; Gillian E Wu
Journal:  Immunogenetics       Date:  2004-09-18       Impact factor: 2.846

7.  Phylogenetic incongruence in Cymbidium orchids.

Authors:  Guo-Qiang Zhang; Gui-Zhen Chen; Li-Jun Chen; Jun-Wen Zhai; Jie Huang; Xin-Yi Wu; Ming-He Li; Dong-Hui Peng; Wen-Hui Rao; Zhong-Jian Liu; Si-Ren Lan
Journal:  Plant Divers       Date:  2021-09-09

8.  Balanced gene losses, duplications and intensive rearrangements led to an unusual regularly sized genome in Arbutus unedo chloroplasts.

Authors:  Fernando Martínez-Alberola; Eva M Del Campo; David Lázaro-Gimeno; Sergio Mezquita-Claramonte; Arantxa Molins; Isabel Mateu-Andrés; Joan Pedrola-Monfort; Leonardo M Casano; Eva Barreno
Journal:  PLoS One       Date:  2013-11-18       Impact factor: 3.240

9.  Complete plastid genome sequence of Primula sinensis (Primulaceae): structure comparison, sequence variation and evidence for accD transfer to nucleus.

Authors:  Tong-Jian Liu; Cai-Yun Zhang; Hai-Fei Yan; Lu Zhang; Xue-Jun Ge; Gang Hao
Journal:  PeerJ       Date:  2016-06-28       Impact factor: 2.984

10.  Phylotranscriptomic Analysis Based on Coalescence was Less Influenced by the Evolving Rates and the Number of Genes: A Case Study in Ericales.

Authors:  Lu Zhang; Wei Wu; Hai-Fei Yan; Xue-Jun Ge
Journal:  Evol Bioinform Online       Date:  2016-01-18       Impact factor: 1.625

  10 in total

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