Literature DB >> 15046239

NeuroSys: a semistructured laboratory database.

Sandy Pittendrigh1, Gwen Jacobs.   

Abstract

The inherent complexity of traditional relational database systems is a key obstacle to more widespread use of database technology in the neuroscience community. As an alternative to relational technology, we propose a simpler semistructured data model for documenting laboratory procedures and results. The semistructured data model allows researchers to document their data in an organized, regularly formatted, machine-readable, and network accessible manner, without requiring the services of database professionals. We present proof-of-concept software, consisting of an HTML interface that communicates with a remotely located, semistructured database. We also discuss the importance of standardized terminology and the importance of building flexible data description systems that are more easily adapted and reconfigured to conform with standardized terminologies as they evolve.

Mesh:

Year:  2003        PMID: 15046239     DOI: 10.1007/s12021-003-0003-0

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  4 in total

1.  Databasing the brain.

Authors:  M Chicurel
Journal:  Nature       Date:  2000-08-24       Impact factor: 49.962

Review 2.  Non-curated distributed databases for experimental data and models in neuroscience.

Authors:  R C Cannon; F W Howell; N H Goddard; E De Schutter
Journal:  Network       Date:  2002-08       Impact factor: 1.273

Review 3.  The Human Brain Project: neuroinformatics tools for integrating, searching and modeling multidisciplinary neuroscience data.

Authors:  G M Shepherd; J S Mirsky; M D Healy; M S Singer; E Skoufos; M S Hines; P M Nadkarni; P L Miller
Journal:  Trends Neurosci       Date:  1998-11       Impact factor: 13.837

4.  Common data model for neuroscience data and data model exchange.

Authors:  D Gardner; K H Knuth; M Abato; S M Erde; T White; R DeBellis; E P Gardner
Journal:  J Am Med Inform Assoc       Date:  2001 Jan-Feb       Impact factor: 4.497

  4 in total
  9 in total

1.  Linking investigators. A centralized linking facility for data sharing and coordination of samples in tissue banks.

Authors:  Neil R Smalheiser
Journal:  EMBO Rep       Date:  2003-02       Impact factor: 8.807

2.  Axiope tools for data management and data sharing.

Authors:  Nigel H Goddard; Robert C Cannon; Fred W Howell
Journal:  Neuroinformatics       Date:  2003

3.  NeuroScholar's electronic laboratory notebook and its application to neuroendocrinology.

Authors:  Arshad M Khan; Joel D Hahn; Wei-Cheng Cheng; Alan G Watts; Gully A P C Burns
Journal:  Neuroinformatics       Date:  2006

4.  Issues in biomedical research data management and analysis: needs and barriers.

Authors:  Nicholas R Anderson; E Sally Lee; J Scott Brockenbrough; Mark E Minie; Sherrilynne Fuller; James Brinkley; Peter Tarczy-Hornoch
Journal:  J Am Med Inform Assoc       Date:  2007-04-25       Impact factor: 4.497

5.  Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).

Authors:  Karl G Helmer; Jose Luis Ambite; Joseph Ames; Rachana Ananthakrishnan; Gully Burns; Ann L Chervenak; Ian Foster; Lee Liming; David Keator; Fabio Macciardi; Ravi Madduri; John-Paul Navarro; Steven Potkin; Bruce Rosen; Seth Ruffins; Robert Schuler; Jessica A Turner; Arthur Toga; Christina Williams; Carl Kesselman
Journal:  J Am Med Inform Assoc       Date:  2011-04-22       Impact factor: 4.497

6.  BrainMap: the social evolution of a human brain mapping database.

Authors:  Angela R Laird; Jack L Lancaster; Peter T Fox
Journal:  Neuroinformatics       Date:  2005

7.  NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments.

Authors:  Daniel García Murillo; Yixin Zhao; Ora S Rogovin; Kelly Zhang; Andrew W Hu; Mo Re Kim; Shufei Chen; Ziqi Wang; Zoey C Keeley; Daniel I Shin; Victor M Suárez Casanova; Yannan Zhu; Lisandro Martin; Olga Papaemmanouil; Stephen D Van Hooser
Journal:  eNeuro       Date:  2022-02-09

8.  Database analysis of simulated and recorded electrophysiological datasets with PANDORA's toolbox.

Authors:  Cengiz Günay; Jeremy R Edgerton; Su Li; Thomas Sangrey; Astrid A Prinz; Dieter Jaeger
Journal:  Neuroinformatics       Date:  2009-05-28

9.  SynapticDB, effective web-based management and sharing of data from serial section electron microscopy.

Authors:  Bitao Shi; Jennifer Bourne; Kristen M Harris
Journal:  Neuroinformatics       Date:  2011-03
  9 in total

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