Literature DB >> 15033505

Application of multivariate resolution methods to the study of biochemical and biophysical processes.

Joaquim Jaumot1, Montse Vives, Raimundo Gargallo.   

Abstract

Multivariate resolution methods make up a set of mathematical tools that may be applied to the analysis and interpretation of spectroscopic data recorded when monitoring a physical or chemical process with multichannel detectors. The goal of resolution methods is the recovery of chemical and/or physical information from the experimental data. Such data include, for example, the number of intermediates present in a reaction, the rate or equilibrium constants, and the spectra for each one of those intermediates. Multivariate resolution methods have been shown to be useful for the study of biophysical and biochemical processes such as folding/unfolding of proteins or nucleic acids. The present article reviews the most frequently used resolution methods, the limitations on their use, and their latest applications in protein and nucleic acid research.

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Year:  2004        PMID: 15033505     DOI: 10.1016/j.ab.2003.12.028

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  11 in total

1.  Quantitative analysis of multisite protein-ligand interactions by NMR: binding of intrinsically disordered p53 transactivation subdomains with the TAZ2 domain of CBP.

Authors:  Munehito Arai; Josephine C Ferreon; Peter E Wright
Journal:  J Am Chem Soc       Date:  2012-02-15       Impact factor: 15.419

2.  Principal component analysis of the pH-dependent conformational transitions of bovine beta-lactoglobulin monitored by heteronuclear NMR.

Authors:  Kazumasa Sakurai; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

3.  Wide-angle X-ray solution scattering for protein-ligand binding: multivariate curve resolution with Bayesian confidence intervals.

Authors:  David D L Minh; Lee Makowski
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

4.  A simple model-free method for direct assessment of fluorescent ligand binding by linear spectral summation.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  J Fluoresc       Date:  2013-09-18       Impact factor: 2.217

5.  Automated processing of label-free Raman microscope images of macrophage cells with standardized regression for high-throughput analysis.

Authors:  Robert J Milewski; Yutaro Kumagai; Katsumasa Fujita; Daron M Standley; Nicholas I Smith
Journal:  Immunome Res       Date:  2010-11-19

6.  Resolution of a structural competition involving dimeric G-quadruplex and its C-rich complementary strand.

Authors:  Joaquim Jaumot; Ramon Eritja; Romà Tauler; Raimundo Gargallo
Journal:  Nucleic Acids Res       Date:  2006-01-05       Impact factor: 16.971

7.  Multivariate Curve Resolution and Carbon Balance Constraint to Unravel FTIR Spectra from Fed-Batch Fermentation Samples.

Authors:  Dennis Vier; Stefan Wambach; Volker Schünemann; Klaus-Uwe Gollmer
Journal:  Bioengineering (Basel)       Date:  2017-01-25

8.  Polyphosphates induce amyloid fibril formation of α-synuclein in concentration-dependent distinct manners.

Authors:  Keiichi Yamaguchi; Masatomo So; César Aguirre; Kensuke Ikenaka; Hideki Mochizuki; Yasushi Kawata; Yuji Goto
Journal:  J Biol Chem       Date:  2021-03-04       Impact factor: 5.157

9.  REGALS: a general method to deconvolve X-ray scattering data from evolving mixtures.

Authors:  Steve P Meisburger; Da Xu; Nozomi Ando
Journal:  IUCrJ       Date:  2021-02-06       Impact factor: 4.769

10.  EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components.

Authors:  Petr V Konarev; Melissa A Graewert; Cy M Jeffries; Masakazu Fukuda; Taisiia A Cheremnykh; Vladimir V Volkov; Dmitri I Svergun
Journal:  Protein Sci       Date:  2021-11-22       Impact factor: 6.725

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