Literature DB >> 15023368

Models for biological phosphoryl transfer.

Nicholas H Williams1.   

Abstract

Quantifying the rate of phosphate monoester dianion hydrolysis under physiological conditions has implications for designing transition state mimics and understanding how catalysis is facilitated. Catalysis is energetically most efficient if the mechanistic pathway in solution is stabilised. Monoesters are believed to have a "dissociative" transition state that has little bonding to the nucleophile and leaving group. However, in many instances, it is suggested that enzymes catalyse monoester transfer through an associative (diester-like) pathway. This is perhaps easier to rationalise in terms of the active site residues available. For example, in the catalytic subunit of protein phosphatase 1 (PP1), these are metal ions and cationic side chains which might be expected to stabilise developing negative charge. By using multiple interactions simultaneously, cooperativity in catalysis may be achieved. However, this idea is difficult to demonstrate unambiguously in large, complex natural systems. This contribution examines the background reactivity of phosphate esters, and reports data showing that the substrates for serine/threonine phosphatases have slower intrinsic rate constants than any other enzyme substrates. Using model complexes, the characteristics of alternative (associative) mechanisms that have been proposed for the metallophosphatase catalysed reaction are explored. Finally, complementary catalytic groups are combined with this core complex to look for experimental evidence for possible cooperativity in this context.

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Year:  2004        PMID: 15023368     DOI: 10.1016/j.bbapap.2003.11.031

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  10 in total

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Review 4.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

5.  Artificial reaction coordinate "tunneling" in free-energy calculations: the catalytic reaction of RNase H.

Authors:  Edina Rosta; H Lee Woodcock; Bernard R Brooks; Gerhard Hummer
Journal:  J Comput Chem       Date:  2009-08       Impact factor: 3.376

6.  Systematic Global Analysis of Genes Encoding Protein Phosphatases in Aspergillus fumigatus.

Authors:  Lizziane K Winkelströter; Stephen K Dolan; Thaila Fernanda Dos Reis; Vinícius Leite Pedro Bom; Patrícia Alves de Castro; Daisuke Hagiwara; Raneem Alowni; Gary W Jones; Sean Doyle; Neil Andrew Brown; Gustavo H Goldman
Journal:  G3 (Bethesda)       Date:  2015-05-05       Impact factor: 3.154

7.  The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis.

Authors:  Fernanda Duarte; Alexandre Barrozo; Johan Åqvist; Nicholas H Williams; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2016-08-15       Impact factor: 15.419

8.  Closure of the Human TKFC Active Site: Comparison of the Apoenzyme and the Complexes Formed with Either Triokinase or FMN Cyclase Substrates.

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Journal:  Int J Mol Sci       Date:  2019-03-04       Impact factor: 5.923

9.  Global analysis of serine/threonine and tyrosine protein phosphatase catalytic subunit genes in Neurospora crassa reveals interplay between phosphatases and the p38 mitogen-activated protein kinase.

Authors:  Arit Ghosh; Jacqueline A Servin; Gyungsoon Park; Katherine A Borkovich
Journal:  G3 (Bethesda)       Date:  2014-02-19       Impact factor: 3.154

10.  Characterization of Sphingomyelin Phosphodiesterase Expression in Bumblebee (Bombus lantschouensis).

Authors:  Lei Han; Guiling Ding; Yanjie Liu; Jiaxing Huang; Jie Wu
Journal:  J Insect Sci       Date:  2018-09-01       Impact factor: 1.857

  10 in total

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