Literature DB >> 15020748

Crystal structures of a poplar xyloglucan endotransglycosylase reveal details of transglycosylation acceptor binding.

Patrik Johansson1, Harry Brumer, Martin J Baumann, Asa M Kallas, Hongbin Henriksson, Stuart E Denman, Tuula T Teeri, T Alwyn Jones.   

Abstract

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Thus, XET is a key enzyme in all plant processes that require cell wall remodeling. To provide a basis for detailed structure-function studies, the crystal structure of Populus tremula x tremuloides XET16A (PttXET16A), heterologously expressed in Pichia pastoris, has been determined at 1.8-A resolution. Even though the overall structure of PttXET16A is a curved beta-sandwich similar to other enzymes in the glycoside hydrolase family GH16, parts of its substrate binding cleft are more reminiscent of the distantly related family GH7. In addition, XET has a C-terminal extension that packs against the conserved core, providing an additional beta-strand and a short alpha-helix. The structure of XET in complex with a xyloglucan nonasaccharide, XLLG, reveals a very favorable acceptor binding site, which is a necessary but not sufficient prerequisite for transglycosylation. Biochemical data imply that the enzyme requires sugar residues in both acceptor and donor sites to properly orient the glycosidic bond relative to the catalytic residues.

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Year:  2004        PMID: 15020748      PMCID: PMC412862          DOI: 10.1105/tpc.020065

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  47 in total

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Authors:  S D Knight
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-01

2.  Molray--a web interface between O and the POV-Ray ray tracer.

Authors:  M Harris; T A Jones
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-07-23

3.  Catalysis by hen egg-white lysozyme proceeds via a covalent intermediate.

Authors:  D J Vocadlo; G J Davies; R Laine; S G Withers
Journal:  Nature       Date:  2001-08-23       Impact factor: 49.962

4.  Restructuring of wall-bound xyloglucan by transglycosylation in living plant cells.

Authors:  J E Thompson; S C Fry
Journal:  Plant J       Date:  2001-04       Impact factor: 6.417

5.  The kappa-carrageenase of P. carrageenovora features a tunnel-shaped active site: a novel insight in the evolution of Clan-B glycoside hydrolases.

Authors:  G Michel; L Chantalat; E Duee; T Barbeyron; B Henrissat; B Kloareg; O Dideberg
Journal:  Structure       Date:  2001-06       Impact factor: 5.006

6.  Ping-pong character of nasturtium-seed xyloglucan endotransglycosylase (XET) reaction.

Authors:  R Baran; Z Sulová; E Stratilová; V Farkas
Journal:  Gen Physiol Biophys       Date:  2000-12       Impact factor: 1.512

7.  Ten isoenzymes of xyloglucan endotransglycosylase from plant cell walls select and cleave the donor substrate stochastically.

Authors:  N M Steele; Z Sulová; P Campbell; J Braam; V Farkas; S C Fry
Journal:  Biochem J       Date:  2001-05-01       Impact factor: 3.857

8.  Structural analyses of two arabinose containing oligosaccharides derived from olive fruit xyloglucan: XXSG and XLSG.

Authors:  E Vierhuis; W S York; V S Kolli; J Vincken; H A Schols; G W Van Alebeek; A G Voragen
Journal:  Carbohydr Res       Date:  2001-06-04       Impact factor: 2.104

9.  In vivo colocalization of xyloglucan endotransglycosylase activity and its donor substrate in the elongation zone of Arabidopsis roots.

Authors:  K Vissenberg; I M Martinez-Vilchez; J P Verbelen; J G Miller; S C Fry
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

10.  In vitro activities of four xyloglucan endotransglycosylases from Arabidopsis.

Authors:  P Campbell; J Braam
Journal:  Plant J       Date:  1999-05       Impact factor: 6.417

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  44 in total

1.  The XTH gene family: an update on enzyme structure, function, and phylogeny in xyloglucan remodeling.

Authors:  Jens M Eklöf; Harry Brumer
Journal:  Plant Physiol       Date:  2010-04-26       Impact factor: 8.340

2.  XET activity is found near sites of growth and cell elongation in bryophytes and some green algae: new insights into the evolution of primary cell wall elongation.

Authors:  Vicky S T Van Sandt; Herman Stieperaere; Yves Guisez; Jean-Pierre Verbelen; Kris Vissenberg
Journal:  Ann Bot       Date:  2006-11-10       Impact factor: 4.357

3.  The β-glucanase ZgLamA from Zobellia galactanivorans evolved a bent active site adapted for efficient degradation of algal laminarin.

Authors:  Aurore Labourel; Murielle Jam; Alexandra Jeudy; Jan-Hendrik Hehemann; Mirjam Czjzek; Gurvan Michel
Journal:  J Biol Chem       Date:  2013-12-11       Impact factor: 5.157

4.  AtBGAL10 is the main xyloglucan β-galactosidase in Arabidopsis, and its absence results in unusual xyloglucan subunits and growth defects.

Authors:  Javier Sampedro; Cristina Gianzo; Natalia Iglesias; Esteban Guitián; Gloria Revilla; Ignacio Zarra
Journal:  Plant Physiol       Date:  2012-01-20       Impact factor: 8.340

5.  Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases.

Authors:  Nicholas McGregor; Victor Yin; Ching-Chieh Tung; Filip Van Petegem; Harry Brumer
Journal:  Plant J       Date:  2017-02-11       Impact factor: 6.417

6.  The agar-specific hydrolase ZgAgaC from the marine bacterium Zobellia galactanivorans defines a new GH16 protein subfamily.

Authors:  Anaïs Naretto; Mathieu Fanuel; David Ropartz; Hélène Rogniaux; Robert Larocque; Mirjam Czjzek; Charles Tellier; Gurvan Michel
Journal:  J Biol Chem       Date:  2019-03-07       Impact factor: 5.157

7.  A real-time fluorogenic assay for the visualization of glycoside hydrolase activity in planta.

Authors:  Farid M Ibatullin; Alicja Banasiak; Martin J Baumann; Lionel Greffe; Junko Takahashi; Ewa J Mellerowicz; Harry Brumer
Journal:  Plant Physiol       Date:  2009-09-25       Impact factor: 8.340

8.  Molecular mechanisms of yeast cell wall glucan remodeling.

Authors:  Ramon Hurtado-Guerrero; Alexander W Schüttelkopf; Isabelle Mouyna; Adel F M Ibrahim; Sharon Shepherd; Thierry Fontaine; Jean-Paul Latgé; Daan M F van Aalten
Journal:  J Biol Chem       Date:  2008-12-19       Impact factor: 5.157

Review 9.  Re-interpreting the role of endo-beta-mannanases as mannan endotransglycosylase/hydrolases in the plant cell wall.

Authors:  Roswitha Schröder; Ross G Atkinson; Robert J Redgwell
Journal:  Ann Bot       Date:  2009-05-19       Impact factor: 4.357

10.  Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum.

Authors:  Hongnan Cao; Jonathan D Walton; Phil Brumm; George N Phillips
Journal:  J Biol Chem       Date:  2014-08-01       Impact factor: 5.157

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