Literature DB >> 15020709

Bioinformatical assay of human gene morbidity.

Fyodor A Kondrashov1, Aleksey Y Ogurtsov, Alexey S Kondrashov.   

Abstract

Only a fraction of eukaryotic genes affect the phenotype drastically. We compared 18 parameters in 1273 human morbid genes, known to cause diseases, and in the remaining 16 580 unambiguous human genes. Morbid genes evolve more slowly, have wider phylogenetic distributions, are more similar to essential genes of Drosophila melanogaster, code for longer proteins containing more alanine and glycine and less histidine, lysine and methionine, possess larger numbers of longer introns with more accurate splicing signals and have higher and broader expressions. These differences make it possible to classify as non-morbid 34% of human genes with unknown morbidity, when only 5% of known morbid genes are incorrectly classified as non-morbid. This classification can help to identify disease-causing genes among multiple candidates.

Entities:  

Mesh:

Year:  2004        PMID: 15020709      PMCID: PMC390328          DOI: 10.1093/nar/gkh330

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  37 in total

1.  Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.

Authors:  Dmitri M Krylov; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

2.  Genomic function: Rate of evolution and gene dispensability.

Authors:  Csaba Pál; Balázs Papp; Laurence D Hurst
Journal:  Nature       Date:  2003-01-30       Impact factor: 49.962

Review 3.  Challenges and strategies for investigating the genetic complexity of common human diseases.

Authors:  Stephen S Rich; Patrick Concannon
Journal:  Diabetes       Date:  2002-12       Impact factor: 9.461

4.  Rate of protein evolution versus fitness effect of gene deletion.

Authors:  Jing Yang; Zhenglong Gu; Wen-Hsiung Li
Journal:  Mol Biol Evol       Date:  2003-04-02       Impact factor: 16.240

5.  Database resources of the National Center for Biotechnology.

Authors:  David L Wheeler; Deanna M Church; Scott Federhen; Alex E Lash; Thomas L Madden; Joan U Pontius; Gregory D Schuler; Lynn M Schriml; Edwin Sequeira; Tatiana A Tatusova; Lukas Wagner
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

Review 6.  Prostate cancer susceptibility genes: lessons learned and challenges posed.

Authors:  J Simard; M Dumont; D Labuda; D Sinnett; C Meloche; M El-Alfy; L Berger; E Lees; F Labrie; S V Tavtigian
Journal:  Endocr Relat Cancer       Date:  2003-06       Impact factor: 5.678

7.  Human disease genes: patterns and predictions.

Authors:  Nick G C Smith; Adam Eyre-Walker
Journal:  Gene       Date:  2003-10-30       Impact factor: 3.688

Review 8.  Knockouts model the 100 best-selling drugs--will they model the next 100?

Authors:  Brian P Zambrowicz; Arthur T Sands
Journal:  Nat Rev Drug Discov       Date:  2003-01       Impact factor: 84.694

9.  Nonsyndromic X-linked mental retardation: where are the missing mutations?

Authors:  Hans-Hilger Ropers; Maria Hoeltzenbein; Vera Kalscheuer; Helger Yntema; Ben Hamel; Jean-Pierre Fryns; Jamel Chelly; Michael Partington; Jozef Gecz; Claude Moraine
Journal:  Trends Genet       Date:  2003-06       Impact factor: 11.639

Review 10.  New methods for finding disease-susceptibility genes: impact and potential.

Authors:  Mark I McCarthy; Damian Smedley; Winston Hide
Journal:  Genome Biol       Date:  2003-09-19       Impact factor: 13.583

View more
  23 in total

1.  Persistence time of loss-of-function mutations at nonessential loci affecting eye color in Drosophila melanogaster.

Authors:  Lev Y Yampolsky; Chenoa Allen; Svetlana A Shabalina; Alexey S Kondrashov
Journal:  Genetics       Date:  2005-08-22       Impact factor: 4.562

2.  Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota.

Authors:  James J Cai; Patrick C Y Woo; Susanna K P Lau; David K Smith; Kwok-Yung Yuen
Journal:  J Mol Evol       Date:  2006-06-03       Impact factor: 2.395

3.  Advances in translational bioinformatics: computational approaches for the hunting of disease genes.

Authors:  Maricel G Kann
Journal:  Brief Bioinform       Date:  2009-12-10       Impact factor: 11.622

4.  Similarly strong purifying selection acts on human disease genes of all evolutionary ages.

Authors:  James J Cai; Elhanan Borenstein; Rong Chen; Dmitri A Petrov
Journal:  Genome Biol Evol       Date:  2009-05-27       Impact factor: 3.416

5.  Natural selection on genes that underlie human disease susceptibility.

Authors:  Ran Blekhman; Orna Man; Leslie Herrmann; Adam R Boyko; Amit Indap; Carolin Kosiol; Carlos D Bustamante; Kosuke M Teshima; Molly Przeworski
Journal:  Curr Biol       Date:  2008-06-24       Impact factor: 10.834

6.  Quantifying dominance and deleterious effect on human disease genes.

Authors:  Naoki Osada; Shuhei Mano; Jun Gojobori
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-12       Impact factor: 11.205

7.  The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome.

Authors:  Shivashankar H Nagaraj; Aaron Ingham; Antonio Reverter
Journal:  BMC Genomics       Date:  2010-12-02       Impact factor: 3.969

8.  Defining the role of essential genes in human disease.

Authors:  Jonathan E Dickerson; Ana Zhu; David L Robertson; Kathryn E Hentges
Journal:  PLoS One       Date:  2011-11-11       Impact factor: 3.240

9.  A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data.

Authors:  Min Li; Hanhui Zhang; Jian-xin Wang; Yi Pan
Journal:  BMC Syst Biol       Date:  2012-03-10

10.  Correlation of microsynteny conservation and disease gene distribution in mammalian genomes.

Authors:  Simon C Lovell; Xiting Li; Nimmi R Weerasinghe; Kathryn E Hentges
Journal:  BMC Genomics       Date:  2009-11-12       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.