Literature DB >> 15020490

Selection, subdivision and extinction and recolonization.

Joshua L Cherry1.   

Abstract

In a subdivided population, the interaction between natural selection and stochastic change in allele frequency is affected by the occurrence of local extinction and subsequent recolonization. The relative importance of selection can be diminished by this additional source of stochastic change in allele frequency. Results are presented for subdivided populations with extinction and recolonization where there is more than one founding allele after extinction, where these may tend to come from the same source deme, where the number of founding alleles is variable or the founders make unequal contributions, and where there is dominance for fitness or local frequency dependence. The behavior of a selected allele in a subdivided population is in all these situations approximately the same as that of an allele with different selection parameters in an unstructured population with a different size. The magnitude of the quantity N(e)s(e), which determines fixation probability in the case of genic selection, is always decreased by extinction and recolonization, so that deleterious alleles are more likely to fix and advantageous alleles less likely to do so. The importance of dominance or frequency dependence is also altered by extinction and recolonization. Computer simulations confirm that the theoretical predictions of both fixation probabilities and mean times to fixation are good approximations.

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Year:  2004        PMID: 15020490      PMCID: PMC1470724          DOI: 10.1534/genetics.166.2.1105

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  15 in total

1.  Selection in a subdivided population with dominance or local frequency dependence.

Authors:  Joshua L Cherry
Journal:  Genetics       Date:  2003-04       Impact factor: 4.562

2.  A diffusion approximation for selection and drift in a subdivided population.

Authors:  Joshua L Cherry; John Wakeley
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

3.  Fixation probability and time in subdivided populations.

Authors:  Michael C Whitlock
Journal:  Genetics       Date:  2003-06       Impact factor: 4.562

4.  Genetic variability and effective population size when local extinction and recolonization of subpopulations are frequent.

Authors:  T Maruyama; M Kimura
Journal:  Proc Natl Acad Sci U S A       Date:  1980-11       Impact factor: 11.205

5.  Genetics of Natural Populations. V. Relations between Mutation Rate and Accumulation of Lethals in Populations of Drosophila Pseudoobscura.

Authors:  T Dobzhansky; S Wright
Journal:  Genetics       Date:  1941-01       Impact factor: 4.562

6.  The Average Number of Generations until Fixation of a Mutant Gene in a Finite Population.

Authors:  M Kimura; T Ohta
Journal:  Genetics       Date:  1969-03       Impact factor: 4.562

7.  The effective size of a subdivided population.

Authors:  M C Whitlock; N H Barton
Journal:  Genetics       Date:  1997-05       Impact factor: 4.562

8.  On the fixation probability of mutant genes in a subdivided population.

Authors:  T Maruyama
Journal:  Genet Res       Date:  1970-04       Impact factor: 1.588

9.  The establishment of underdominant chromosomal rearrangements in multi-deme systems with local extinction and colonization.

Authors:  F Spirito; M Rizzoni; C Rossi
Journal:  Theor Popul Biol       Date:  1993-08       Impact factor: 1.570

10.  Gene flow and genetic drift in a species subject to frequent local extinctions.

Authors:  M Slatkin
Journal:  Theor Popul Biol       Date:  1977-12       Impact factor: 1.570

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  6 in total

1.  Population genetics of polymorphism and divergence for diploid selection models with arbitrary dominance.

Authors:  Scott Williamson; Adi Fledel-Alon; Carlos D Bustamante
Journal:  Genetics       Date:  2004-09       Impact factor: 4.562

2.  Evolution of coadaptation in a subdivided population.

Authors:  K Ryo Takahasi
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

3.  Quasi-species evolution in subdivided populations favours maximally deleterious mutations.

Authors:  Brendan D O'Fallon; Frederick R Adler; Stephen R Proulx
Journal:  Proc Biol Sci       Date:  2007-12-22       Impact factor: 5.349

Review 4.  The fixation probability of beneficial mutations.

Authors:  Z Patwa; L M Wahl
Journal:  J R Soc Interface       Date:  2008-11-06       Impact factor: 4.118

5.  Evolutionary dynamics of insertion sequences in Helicobacter pylori.

Authors:  Awdhesh Kalia; Asish K Mukhopadhyay; Giedrius Dailide; Yoshiyki Ito; Takeshi Azuma; Benjamin C Y Wong; Douglas E Berg
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

6.  Simulating the spread of selection-driven genotypes using landscape resistance models for desert bighorn sheep.

Authors:  Tyler G Creech; Clinton W Epps; Erin L Landguth; John D Wehausen; Rachel S Crowhurst; Brandon Holton; Ryan J Monello
Journal:  PLoS One       Date:  2017-05-02       Impact factor: 3.240

  6 in total

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