Literature DB >> 15020042

Anatomy of a hypersensitive site.

Hans Reinke1, Wolfram Hörz.   

Abstract

The 600-bp accessible region at the activated PHO5 promoter in S. cerevisiae has become a paradigm for hypersensitive sites. In this review, we summarize the various experimental strategies used to characterize chromatin at the active promoter and point out their virtues and their limitations. We describe the properties of chromatin at the active PHO5 promoter and what we currently know about the transition from the inactive to the active state. The implications for generating a hypersensitive region in chromatin are discussed.

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Year:  2004        PMID: 15020042     DOI: 10.1016/j.bbaexp.2003.09.014

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  17 in total

Review 1.  Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription.

Authors:  Daniel A Gilchrist; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2012-03-02

2.  In vitro reconstitution of PHO5 promoter chromatin remodeling points to a role for activator-nucleosome competition in vivo.

Authors:  Franziska Ertel; A Barbara Dirac-Svejstrup; Christina Bech Hertel; Dorothea Blaschke; Jesper Q Svejstrup; Philipp Korber
Journal:  Mol Cell Biol       Date:  2010-06-21       Impact factor: 4.272

3.  Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter.

Authors:  Philipp Korber; Tim Luckenbach; Dorothea Blaschke; Wolfram Hörz
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

4.  Rapid accessibility of nucleosomal DNA in yeast on a second time scale.

Authors:  Andrea Bucceri; Kristin Kapitza; Fritz Thoma
Journal:  EMBO J       Date:  2006-06-15       Impact factor: 11.598

5.  Histone dynamics on the interleukin-2 gene in response to T-cell activation.

Authors:  Xinxin Chen; Jun Wang; Donna Woltring; Steve Gerondakis; M Frances Shannon
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

6.  Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability.

Authors:  Christian J Wippo; Bojana Silic Krstulovic; Franziska Ertel; Sanja Musladin; Dorothea Blaschke; Sabrina Stürzl; Guo-Cheng Yuan; Wolfram Hörz; Philipp Korber; Slobodan Barbaric
Journal:  Mol Cell Biol       Date:  2009-03-23       Impact factor: 4.272

7.  The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter.

Authors:  Margaret K Shirra; Sarah E Rogers; Diane E Alexander; Karen M Arndt
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

8.  A distal locus element mediates IFN-γ priming of lipopolysaccharide-stimulated TNF gene expression.

Authors:  Nancy A Chow; Luke D Jasenosky; Anne E Goldfeld
Journal:  Cell Rep       Date:  2014-12-04       Impact factor: 9.423

9.  A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions.

Authors:  Asjad Basheer; Harald Berger; Yazmid Reyes-Dominguez; Markus Gorfer; Joseph Strauss
Journal:  Nucleic Acids Res       Date:  2009-02-27       Impact factor: 16.971

10.  Inducible nucleosome depletion at OREBP-binding-sites by hypertonic stress.

Authors:  Edith H Y Tong; Jin-Jun Guo; Song-Xiao Xu; Keri Mak; Sookja K Chung; Stephen S M Chung; Ali-Long Huang; Ben C B Ko
Journal:  PLoS One       Date:  2009-12-24       Impact factor: 3.240

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