Literature DB >> 15016916

Pressure-dissociable reversible assembly of intrinsically denatured lysozyme is a precursor for amyloid fibrils.

Tara N Niraula1, Takashi Konno, Hua Li, Hiroaki Yamada, Kazuyuki Akasaka, Hideki Tachibana.   

Abstract

Although a diversity of proteins is known to form amyloid fibers, their common mechanisms are not clear. Here, we show that an intrinsically unfolded protein (U), represented by a disulfide-deficient variant of hen lysozyme with no tertiary structure, forms an amyloid-like fibril after prolonged incubation. Using variable pressure NMR along with sedimentation velocity, circular dichroism, and fluorescence measurements, we show that, before the fibril formation, the protein forms a pressure-dissociable, soluble assemblage (U'(n)) with a sedimentation coefficient of 17 S and a rich intermolecular beta-sheet structure. The reversible assemblage is characterized with a Gibbs energy for association of -23.3 +/- 0.8 kJ.mol(-1) and a volume increase of 52.7 +/- 11.3 ml.mol(-1) per monomer unit, and involves preferential interaction of hydrophobic residues in the initial association step. These results indicate that amyloid fibril formation can proceed from an intrinsically denatured protein and suggest a scheme N <==>U <==>U'(n)-->fibril as a common mechanism of fibril formation in amyloidogenic proteins, where two-way arrows represent reversible processes, one-way arrow represents an irreversible process, and N, U, and U'(n)represent, respectively, the native conformer, the unfolded monomeric conformer, and the soluble assemblage of unfolded conformers.

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Year:  2004        PMID: 15016916      PMCID: PMC394761          DOI: 10.1073/pnas.0305798101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

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Journal:  Fold Des       Date:  1998

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Authors:  J W Kelly
Journal:  Curr Opin Struct Biol       Date:  1998-02       Impact factor: 6.809

6.  Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis.

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Journal:  J Mol Biol       Date:  1997-09-05       Impact factor: 5.469

Review 8.  Pressure stability of proteins.

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Journal:  Annu Rev Phys Chem       Date:  1993       Impact factor: 12.703

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Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

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Journal:  Arch Biochem Biophys       Date:  1981-09       Impact factor: 4.013

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  14 in total

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Authors:  Daniella Ishimaru; Luis M T R Lima; Lenize F Maia; Priscila M Lopez; Ana P Ano Bom; Ana P Valente; Jerson L Silva
Journal:  Biophys J       Date:  2004-08-06       Impact factor: 4.033

2.  Pressure-accelerated dissociation of amyloid fibrils in wild-type hen lysozyme.

Authors:  Buddha R Shah; Akihiro Maeno; Hiroshi Matsuo; Hideki Tachibana; Kazuyuki Akasaka
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

3.  Amyloid formation in denatured single-mutant lysozymes where residual structures are modulated.

Authors:  Tomonori Mishima; Takatoshi Ohkuri; Akira Monji; Taiji Imoto; Tadashi Ueda
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725

4.  Kinetic analysis of amyloid protofibril dissociation and volumetric properties of the transition state.

Authors:  Abdul Raziq Abdul Latif; Ryohei Kono; Hideki Tachibana; Kazuyuki Akasaka
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

5.  Hydration effects on the HET-s prion and amyloid-beta fibrillous aggregates, studied with three-dimensional molecular theory of solvation.

Authors:  Takeshi Yamazaki; Nikolay Blinov; David Wishart; Andriy Kovalenko
Journal:  Biophys J       Date:  2008-08-08       Impact factor: 4.033

6.  Amyloid features and neuronal toxicity of mature prion fibrils are highly sensitive to high pressure.

Authors:  Driss El Moustaine; Veronique Perrier; Isabelle Acquatella-Tran Van Ba; Filip Meersman; Valeriy G Ostapchenko; Ilia V Baskakov; Reinhard Lange; Joan Torrent
Journal:  J Biol Chem       Date:  2011-02-25       Impact factor: 5.157

7.  Pressure-assisted dissociation and degradation of "proteinase K-resistant" fibrils prepared by seeding with scrapie-infected hamster prion protein.

Authors:  Kazuyuki Akasaka; Akihiro Maeno; Taichi Murayama; Hideki Tachibana; Yuzo Fujita; Hitoki Yamanaka; Noriyuki Nishida; Ryuichiro Atarashi
Journal:  Prion       Date:  2014       Impact factor: 3.931

8.  Revealing different aggregation pathways of amyloidogenic proteins by ultrasound velocimetry.

Authors:  Vytautas Smirnovas; Roland Winter
Journal:  Biophys J       Date:  2008-01-11       Impact factor: 4.033

9.  Unique properties of human β-defensin 6 (hBD6) and glycosaminoglycan complex: sandwich-like dimerization and competition with the chemokine receptor 2 (CCR2) binding site.

Authors:  Viviane S De Paula; Vitor H Pomin; Ana Paula Valente
Journal:  J Biol Chem       Date:  2014-06-26       Impact factor: 5.157

Review 10.  Ligand binding and hydration in protein misfolding: insights from studies of prion and p53 tumor suppressor proteins.

Authors:  Jerson L Silva; Tuane C R G Vieira; Mariana P B Gomes; Ana Paula Ano Bom; Luis Mauricio T R Lima; Monica S Freitas; Daniella Ishimaru; Yraima Cordeiro; Debora Foguel
Journal:  Acc Chem Res       Date:  2010-02-16       Impact factor: 22.384

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