Literature DB >> 15012760

Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model.

Laurent Excoffier1.   

Abstract

It has been long recognized that population demographic expansions lead to distinctive features in the molecular diversity of populations. However, recent simulation results have suggested that a distinction could be made between a pure demographic expansion in an unsubdivided population, and a range expansion in a subdivided population, both leading to a large increase in the total number of the individuals. In order to better characterize the effect of a range expansion, I introduce a simple model of instantaneous expansion under an infinite-island model, under which I derive the distribution of the number of mutation differences between pairs of genes (the mismatch distribution), the heterozygosity, the average number of pairwise difference, and the fixation index F(ST). These derivations are checked against simulations, and are shown to lead to results qualitatively similar to those one would obtain after a range expansion in a 2-dimensional stepping-stone model. I then apply these results to estimate immigration rates in hunter-gather and post-Neolithic human populations from patterns of mitochondrial (mtDNA) diversity. Potential problems with this estimation procedure are also discussed.

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Year:  2004        PMID: 15012760     DOI: 10.1046/j.1365-294x.2003.02004.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  122 in total

1.  Bayesian estimation of recent migration rates after a spatial expansion.

Authors:  Grant Hamilton; Mathias Currat; Nicolas Ray; Gerald Heckel; Mark Beaumont; Laurent Excoffier
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

2.  The effect of the Neolithic expansion on European molecular diversity.

Authors:  Mathias Currat; Laurent Excoffier
Journal:  Proc Biol Sci       Date:  2005-04-07       Impact factor: 5.349

3.  Molecular diversity after a range expansion in heterogeneous environments.

Authors:  Daniel Wegmann; Mathias Currat; Laurent Excoffier
Journal:  Genetics       Date:  2006-10-08       Impact factor: 4.562

4.  The impact of sampling schemes on the site frequency spectrum in nonequilibrium subdivided populations.

Authors:  Thomas Städler; Bernhard Haubold; Carlos Merino; Wolfgang Stephan; Peter Pfaffelhuber
Journal:  Genetics       Date:  2009-02-23       Impact factor: 4.562

5.  Genetic consequences of habitat fragmentation during a range expansion.

Authors:  S Mona; N Ray; M Arenas; L Excoffier
Journal:  Heredity (Edinb)       Date:  2013-10-23       Impact factor: 3.821

6.  Mitochondrial DNA diversity in two ethnic groups in southeastern Kenya: perspectives from the northeastern periphery of the Bantu expansion.

Authors:  Ken Batai; Kara B Babrowski; Juan Pablo Arroyo; Chapurukha M Kusimba; Sloan R Williams
Journal:  Am J Phys Anthropol       Date:  2013-02-05       Impact factor: 2.868

7.  Phylogeography of specialist weevil Trichobaris soror: a seed predator of Datura stramonium.

Authors:  Marisol De-la-Mora; Daniel Piñero; Juan Núñez-Farfán
Journal:  Genetica       Date:  2015-10-24       Impact factor: 1.082

8.  Genetic evidence for hybrid trait speciation in heliconius butterflies.

Authors:  Camilo Salazar; Simon W Baxter; Carolina Pardo-Diaz; Grace Wu; Alison Surridge; Mauricio Linares; Eldredge Bermingham; Chris D Jiggins
Journal:  PLoS Genet       Date:  2010-04-29       Impact factor: 5.917

Review 9.  Inference of population history by coupling exploratory and model-driven phylogeographic analyses.

Authors:  Ryan C Garrick; Adalgisa Caccone; Paul Sunnucks
Journal:  Int J Mol Sci       Date:  2010-03-24       Impact factor: 5.923

10.  The origins of lactase persistence in Europe.

Authors:  Yuval Itan; Adam Powell; Mark A Beaumont; Joachim Burger; Mark G Thomas
Journal:  PLoS Comput Biol       Date:  2009-08-28       Impact factor: 4.475

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