Literature DB >> 15716508

Bayesian estimation of recent migration rates after a spatial expansion.

Grant Hamilton1, Mathias Currat, Nicolas Ray, Gerald Heckel, Mark Beaumont, Laurent Excoffier.   

Abstract

Approximate Bayesian computation (ABC) is a highly flexible technique that allows the estimation of parameters under demographic models that are too complex to be handled by full-likelihood methods. We assess the utility of this method to estimate the parameters of range expansion in a two-dimensional stepping-stone model, using samples from either a single deme or multiple demes. A minor modification to the ABC procedure is introduced, which leads to an improvement in the accuracy of estimation. The method is then used to estimate the expansion time and migration rates for five natural common vole populations in Switzerland typed for a sex-linked marker and a nuclear marker. Estimates based on both markers suggest that expansion occurred <10,000 years ago, after the most recent glaciation, and that migration rates are strongly male biased.

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Year:  2005        PMID: 15716508      PMCID: PMC1449703          DOI: 10.1534/genetics.104.034199

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  23 in total

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Authors:  J K Pritchard; M T Seielstad; A Perez-Lezaun; M W Feldman
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Review 2.  The genetic legacy of the Quaternary ice ages.

Authors:  G Hewitt
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3.  Distinguishing migration from isolation: a Markov chain Monte Carlo approach.

Authors:  R Nielsen; J Wakeley
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

4.  Approximate Bayesian computation in population genetics.

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5.  Simultaneous estimation of all the parameters of a stepwise mutation model.

Authors:  Y X Fu; R Chakraborty
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

6.  Microsatellites, from molecules to populations and back.

Authors:  P Jarne; P J Lagoda
Journal:  Trends Ecol Evol       Date:  1996-10       Impact factor: 17.712

7.  Genealogies and geography.

Authors:  N H Barton; I Wilson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1995-07-29       Impact factor: 6.237

8.  Genetic analysis of complex demographic scenarios: spatially expanding populations of the cane toad, Bufo marinus.

Authors:  Arnaud Estoup; Mark Beaumont; Florent Sennedot; Craig Moritz; Jean-Marie Cornuet
Journal:  Evolution       Date:  2004-09       Impact factor: 3.694

Review 9.  Mammalian mating systems.

Authors:  T H Clutton-Brock
Journal:  Proc R Soc Lond B Biol Sci       Date:  1989-05-22

10.  Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus.

Authors:  A Estoup; I J Wilson; C Sullivan; J M Cornuet; C Moritz
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  29 in total

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Authors:  Eric Bazin; Kevin J Dawson; Mark A Beaumont
Journal:  Genetics       Date:  2010-04-09       Impact factor: 4.562

2.  Evolutionary study of a potential selection target region in the pig.

Authors:  A Ojeda; S E Ramos-Onsins; D Marletta; L S Huang; J M Folch; M Pérez-Enciso
Journal:  Heredity (Edinb)       Date:  2010-05-26       Impact factor: 3.821

3.  Likelihoods from summary statistics: recent divergence between species.

Authors:  Scotland C Leman; Yuguo Chen; Jason E Stajich; Mohamed A F Noor; Marcy K Uyenoyama
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

4.  Using approximate Bayesian computation to estimate tuberculosis transmission parameters from genotype data.

Authors:  Mark M Tanaka; Andrew R Francis; Fabio Luciani; S A Sisson
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

5.  Molecular diversity after a range expansion in heterogeneous environments.

Authors:  Daniel Wegmann; Mathias Currat; Laurent Excoffier
Journal:  Genetics       Date:  2006-10-08       Impact factor: 4.562

6.  Efficient approximate Bayesian computation coupled with Markov chain Monte Carlo without likelihood.

Authors:  Daniel Wegmann; Christoph Leuenberger; Laurent Excoffier
Journal:  Genetics       Date:  2009-06-08       Impact factor: 4.562

7.  An approximate Bayesian computation approach to overcome biases that arise when using amplified fragment length polymorphism markers to study population structure.

Authors:  Matthieu Foll; Mark A Beaumont; Oscar Gaggiotti
Journal:  Genetics       Date:  2008-05-27       Impact factor: 4.562

8.  High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

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Journal:  Eur J Hum Genet       Date:  2011-04-13       Impact factor: 4.246

9.  ABCtoolbox: a versatile toolkit for approximate Bayesian computations.

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10.  Rapid radiation in spiny lobsters (Palinurus spp) as revealed by classic and ABC methods using mtDNA and microsatellite data.

Authors:  Ferran Palero; Joao Lopes; Pere Abelló; Enrique Macpherson; Marta Pascual; Mark A Beaumont
Journal:  BMC Evol Biol       Date:  2009-11-09       Impact factor: 3.260

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