Literature DB >> 15010216

RNA-dependent RNA polymerases of dsRNA bacteriophages.

Eugene V Makeyev1, Jonathan M Grimes.   

Abstract

Genome replication and transcription of riboviruses are catalyzed by an RNA-dependent RNA polymerase (RdRP). RdRPs are normally associated with other virus- or/and host-encoded proteins that modulate RNA polymerization activity and template specificity. The polymerase complex of double-stranded dsRNA viruses is a large icosahedral particle (inner core) containing RdRP as a minor constituent. In phi6 and other dsRNA bacteriophages from the Cystoviridae family, the inner core is composed of four virus-specific proteins. Of these, protein P2, or Pol subunit, has been tentatively identified as RdRP by sequence comparisons, but the role of this protein in viral RNA synthesis has not been studied until recently. Here, we overview the work on the Pol subunits of phi6 and related viruses from the standpoints of function, structure and evolution.

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Year:  2004        PMID: 15010216     DOI: 10.1016/j.virusres.2003.12.005

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  16 in total

1.  Novel 5'/3'RACE Method for Amplification and Determination of Single-Stranded RNAs Through Double-Stranded RNA (dsRNA) Intermediates.

Authors:  Péter Pankovics; Ákos Boros; Gábor Reuter
Journal:  Mol Biotechnol       Date:  2015-12       Impact factor: 2.695

2.  Single-molecule measurements of the persistence length of double-stranded RNA.

Authors:  J A Abels; F Moreno-Herrero; T van der Heijden; C Dekker; N H Dekker
Journal:  Biophys J       Date:  2005-01-14       Impact factor: 4.033

3.  Nontemplated terminal nucleotidyltransferase activity of double-stranded RNA bacteriophage phi6 RNA-dependent RNA polymerase.

Authors:  Minna M Poranen; Minni R L Koivunen; Dennis H Bamford
Journal:  J Virol       Date:  2008-07-09       Impact factor: 5.103

4.  Theory of the origin, evolution, and nature of life.

Authors:  Erik D Andrulis
Journal:  Life (Basel)       Date:  2011-12-23

5.  The ancient Virus World and evolution of cells.

Authors:  Eugene V Koonin; Tatiana G Senkevich; Valerian V Dolja
Journal:  Biol Direct       Date:  2006-09-19       Impact factor: 4.540

6.  Slow conformational dynamics in the cystoviral RNA-directed RNA polymerase P2: influence of substrate nucleotides and template RNA.

Authors:  Zhen Ren; Ranajeet Ghose
Journal:  Biochemistry       Date:  2011-02-04       Impact factor: 3.162

7.  Dynamics on multiple timescales in the RNA-directed RNA polymerase from the cystovirus phi6.

Authors:  Zhen Ren; Hsin Wang; Ranajeet Ghose
Journal:  Nucleic Acids Res       Date:  2010-04-12       Impact factor: 16.971

8.  Residues Arg283, Arg285, and Ile287 in the nucleotide binding pocket of bovine viral diarrhea virus NS5B RNA polymerase affect catalysis and fidelity.

Authors:  Elena Curti; Joachim Jaeger
Journal:  J Virol       Date:  2012-10-17       Impact factor: 5.103

Review 9.  Functional viral metagenomics and the next generation of molecular tools.

Authors:  Thomas Schoenfeld; Mark Liles; K Eric Wommack; Shawn W Polson; Ronald Godiska; David Mead
Journal:  Trends Microbiol       Date:  2009-11-05       Impact factor: 17.079

10.  Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site.

Authors:  David Dulin; Igor D Vilfan; Bojk A Berghuis; Minna M Poranen; Martin Depken; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2015-10-22       Impact factor: 16.971

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