Literature DB >> 15008415

An overlooked riddle of life's origins: energy-dependent nucleic acid unzipping.

Ladislav Kovác1, Jozef Nosek, L'ubomír Tomáska.   

Abstract

The imposing progress in understanding contemporary life forms on Earth and in manipulating them has not been matched by a comparable progress in understanding the origins of life. This paper argues that a crucial problem of unzipping of the double helix molecule of nucleic acid during its replication has been underrated, if not plainly overlooked, in the theories of life's origin and evolution. A model is presented of how evolution may have solved the problem in its early phase. Similar to several previous models, the model envisages the existence of a protocell, in which osmotic disbalance is being created by accumulation of synthetic products resulting in expansion and division of the protocell. Novel in the model is the presence in the protocell of a double-stranded nucleic acid, with each of its two strands being affixed by its 3'-terminus to the opposite sides of the membrane of a protocell. In the course of the protocell expansion, osmotic force is utilized to pull the two strands longitudinally in opposite directions, unzipping the helix and partitioning the strands between the two daughter protocells. The model is also being used as a background for arguments of why life need operate in cycles. Many formal models of life's origin and evolution have not taken into account the fact that logical possibility does not equal thermodynamic feasibility. A system of self-replication has to consist of both replicators and replicants.

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Year:  2003        PMID: 15008415     DOI: 10.1007/s00239-003-0026-z

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  35 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

Review 2.  A general model for nucleic acid helicases and their "coupling" within macromolecular machines.

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Journal:  Nature       Date:  2002-10-09       Impact factor: 49.962

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Journal:  Curr Opin Chem Biol       Date:  1997-12       Impact factor: 8.822

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Authors:  W Fontana; P Schuster
Journal:  Science       Date:  1998-05-29       Impact factor: 47.728

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Journal:  J Theor Biol       Date:  1990-03-08       Impact factor: 2.691

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Journal:  Science       Date:  1994-11-04       Impact factor: 47.728

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Authors:  R S Root-Bernstein; P F Dillon
Journal:  J Theor Biol       Date:  1997-10-21       Impact factor: 2.691

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Authors:  H Yanagawa; Y Ogawa; K Kojima; M Ito
Journal:  Orig Life Evol Biosph       Date:  1988       Impact factor: 1.950

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  6 in total

1.  Hypothesis: emergence of translation as a result of RNA helicase evolution.

Authors:  Nikolay Zenkin
Journal:  J Mol Evol       Date:  2012-04-28       Impact factor: 2.395

2.  A stochastic model of nonenzymatic nucleic acid replication: "elongators" sequester replicators.

Authors:  Chrisantha Fernando; Günter Von Kiedrowski; Eörs Szathmáry
Journal:  J Mol Evol       Date:  2007-04-13       Impact factor: 2.395

Review 3.  Emergence of Life on Earth: A Physicochemical Jigsaw Puzzle.

Authors:  Jan Spitzer
Journal:  J Mol Evol       Date:  2016-12-19       Impact factor: 2.395

4.  Hydrogen peroxide thermochemical oscillator as driver for primordial RNA replication.

Authors:  Rowena Ball; John Brindley
Journal:  J R Soc Interface       Date:  2014-03-19       Impact factor: 4.118

5.  Evolution of the division of labor between genes and enzymes in the RNA world.

Authors:  Gergely Boza; András Szilágyi; Ádám Kun; Mauro Santos; Eörs Szathmáry
Journal:  PLoS Comput Biol       Date:  2014-12-04       Impact factor: 4.475

6.  The evolution of strand preference in simulated RNA replicators with strand displacement: implications for the origin of transcription.

Authors:  Nobuto Takeuchi; Laura Salazar; Anthony M Poole; Paulien Hogeweg
Journal:  Biol Direct       Date:  2008-08-11       Impact factor: 4.540

  6 in total

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