Literature DB >> 14995652

Stretching of proteins in the entropic limit.

Marek Cieplak1, Trinh Xuan Hoang, Mark O Robbins.   

Abstract

Mechanical stretching of six proteins is studied through molecular dynamics simulations. The model is Go-like, with Lennard-Jones interactions at native contacts. Low-temperature unfolding scenarios are remarkably complex and sensitive to small structural changes. Thermal fluctuations reduce the peak forces and the number of metastable states during unfolding. The unfolding pathways also simplify as temperature rises. In the entropic limit, all proteins show a monotonic decrease of the extension where bonds rupture with their separation along the backbone (contact order).

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Year:  2004        PMID: 14995652     DOI: 10.1103/PhysRevE.69.011912

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Inferring the diameter of a biopolymer from its stretching response.

Authors:  Ngo Minh Toan; Davide Marenduzzo; Cristian Micheletti
Journal:  Biophys J       Date:  2005-04-22       Impact factor: 4.033

2.  Contour length and refolding rate of a small protein controlled by engineered disulfide bonds.

Authors:  Sri Rama Koti Ainavarapu; Jasna Brujic; Hector H Huang; Arun P Wiita; Hui Lu; Lewyn Li; Kirstin A Walther; Mariano Carrion-Vazquez; Hongbin Li; Julio M Fernandez
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

3.  Predicting the order in which contacts are broken during single molecule protein stretching experiments.

Authors:  Joanna I Sułkowska; Andrzej Kloczkowski; Taner Z Sen; Marek Cieplak; Robert L Jernigan
Journal:  Proteins       Date:  2008-04

4.  Stabilizing effect of knots on proteins.

Authors:  Joanna I Sułkowska; Piotr Sulkowski; P Szymczak; Marek Cieplak
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

5.  Dodging the crisis of folding proteins with knots.

Authors:  Joanna I Sułkowska; Piotr Sułkowski; José Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-11       Impact factor: 11.205

6.  Selection of optimal variants of Gō-like models of proteins through studies of stretching.

Authors:  Joanna I Sułkowska; Marek Cieplak
Journal:  Biophys J       Date:  2008-06-20       Impact factor: 4.033

Review 7.  Group theory and biomolecular conformation: I. Mathematical and computational models.

Authors:  Gregory S Chirikjian
Journal:  J Phys Condens Matter       Date:  2010-08-18       Impact factor: 2.333

  7 in total

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