Literature DB >> 14986064

RNA editing in ribosome-less plastids of iojap maize.

Christine P Halter1, Nemo M Peeters, Maureen R Hanson.   

Abstract

In maize chloroplasts, 28 C-to-U editing events have been identified in the transcripts of 14 different genes. The iojap mutant of maize, which lacks chloroplast ribosomes, affords the opportunity to examine whether any chloroplast translation products are required for the editing of any of the 28 sites. Furthermore, the mode of action of the IOJAP protein itself is unknown, so we explored the possibility that homozygous ij1/ ij1 plants are defective in RNA editing. Current knowledge of RNA editing in chloroplasts indicates the existence of site-specific factors responsible for recognizing C targets of editing, but the factors have not yet been identified and their encoding genes are unknown. Our results indicate that all 28 editing sites can be recognized and processed in ribosome-less plastids. Transcripts of rpoB are more abundant and more highly edited in iojap mutants. The editing site in rpl2, which creates the mRNA start codon, is the most severely affected in homozygous ij/ ij plants, but nevertheless exhibits at least 10% editing in all mutant lines. Reduced editing of rpl2 may be an indirect effect of reduced splicing, rather than a defect caused by the iojap mutation. We conclude that neither the IOJAP protein nor chloroplast translation products are required for editing any of the 28 C targets of editing in maize chloroplast RNAs.

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Year:  2004        PMID: 14986064     DOI: 10.1007/s00294-003-0482-4

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  22 in total

1.  Transcript abundance supercedes editing efficiency as a factor in developmental variation of chloroplast gene expression.

Authors:  Nemo M Peeters; Maureen R Hanson
Journal:  RNA       Date:  2002-04       Impact factor: 4.942

2.  Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

3.  Mapping of promoters for the nucleus-encoded plastid RNA polymerase (NEP) in the iojap maize mutant.

Authors:  D Silhavy; P Maliga
Journal:  Curr Genet       Date:  1998-05       Impact factor: 3.886

4.  Site-selective inhibition of plastid RNA editing by heat shock and antibiotics: a role for plastid translation in RNA editing.

Authors:  D Karcher; R Bock
Journal:  Nucleic Acids Res       Date:  1998-03-01       Impact factor: 16.971

5.  Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids.

Authors:  W R Hess; B Hoch; P Zeltz; T Hübschmann; H Kössel; T Börner
Journal:  Plant Cell       Date:  1994-10       Impact factor: 11.277

6.  The three-dimensional structure of the RNA-binding domain of ribosomal protein L2; a protein at the peptidyl transferase center of the ribosome.

Authors:  A Nakagawa; T Nakashima; M Taniguchi; H Hosaka; M Kimura; I Tanaka
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

7.  Molecular cloning and characterization of iojap (ij), a pattern striping gene of maize.

Authors:  C D Han; E H Coe; R A Martienssen
Journal:  EMBO J       Date:  1992-11       Impact factor: 11.598

8.  Editing of the chloroplast rpoB transcript is independent of chloroplast translation and shows different patterns in barley and maize.

Authors:  P Zeltz; W R Hess; K Neckermann; T Börner; H Kössel
Journal:  EMBO J       Date:  1993-11       Impact factor: 11.598

9.  Site-specific factor involved in the editing of the psbL mRNA in tobacco plastids.

Authors:  S Chaudhuri; H Carrer; P Maliga
Journal:  EMBO J       Date:  1995-06-15       Impact factor: 11.598

10.  Targeted inactivation of a tobacco intron-containing open reading frame reveals a novel chloroplast-encoded photosystem I-related gene.

Authors:  S Ruf; H Kössel; R Bock
Journal:  J Cell Biol       Date:  1997-10-06       Impact factor: 10.539

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  7 in total

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Authors:  Michael Y Galperin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2004-10-12       Impact factor: 16.971

2.  Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues.

Authors:  Ching-Chih Tseng; Chih-Jen Lee; Yi-Ting Chung; Tzu-Ying Sung; Ming-Hsiun Hsieh
Journal:  Plant Mol Biol       Date:  2013-05-06       Impact factor: 4.076

3.  Structural features and transcript-editing analysis of sugarcane (Saccharum officinarum L.) chloroplast genome.

Authors:  Tercilio Calsa Júnior; Dirce Maria Carraro; Matheus Romanos Benatti; Alexandre Corrêa Barbosa; João Paulo Kitajima; Helaine Carrer
Journal:  Curr Genet       Date:  2004-11-04       Impact factor: 3.886

4.  Plastid signalling under multiple conditions is accompanied by a common defect in RNA editing in plastids.

Authors:  Tomohiro Kakizaki; Fumiko Yazu; Katsuhiro Nakayama; Yasuko Ito-Inaba; Takehito Inaba
Journal:  J Exp Bot       Date:  2011-09-16       Impact factor: 6.992

5.  WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development.

Authors:  Ying Wang; Yulong Ren; Kunneng Zhou; Linglong Liu; Jiulin Wang; Yang Xu; Huan Zhang; Long Zhang; Zhiming Feng; Liwei Wang; Weiwei Ma; Yunlong Wang; Xiuping Guo; Xin Zhang; Cailin Lei; Zhijun Cheng; Jianmin Wan
Journal:  Front Plant Sci       Date:  2017-06-26       Impact factor: 5.753

6.  Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles.

Authors:  Kei Yura; Mitiko Go
Journal:  BMC Plant Biol       Date:  2008-07-16       Impact factor: 4.215

7.  A PPR protein in the PLS subfamily stabilizes the 5'-end of processed rpl16 mRNAs in maize chloroplasts.

Authors:  Kamel Hammani; Mizuki Takenaka; Rafael Miranda; Alice Barkan
Journal:  Nucleic Acids Res       Date:  2016-04-19       Impact factor: 16.971

  7 in total

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