Literature DB >> 14980972

Phylogenetic relationships in Bupleurum (apiaceae) based on nuclear ribosomal DNA its sequence data.

Susana S Neves1, Mark F Watson.   

Abstract

BACKGROUND AND AIMS: The genus Bupleurum has long been recognized as a natural group, but its infrageneric classification is controversial and has not yet been studied in the light of sequence data.
METHODS: Phylogenetic relationships among 32 species (35 taxa) of the genus Bupleurum were investigated by comparative sequencing of the ITS region of the 18-26S nuclear ribosomal DNA repeat. Exemplar taxa from all currently accepted sections and subsections of the genus were included, along with outgroups from four other early branching Apioideae genera (Anginon, Heteromorpha, Physospermum and Pleurospermum).
RESULTS: Phylogenies generated by maximum parsimony, maximum likelihood, and neighbour-joining methods show similar topologies, demonstrating monophyly of Bupleurum and the division of the genus into two major clades. This division is also supported by analysis of the 5.8S coding sequence alone. The first branching clade is formed by all the species of the genus with pinnate-reticulate veined leaves and B. rigidum with a unique type of leaf venation. The other major clade includes the remaining species studied, all of which have more or less parallel-veined leaves.
CONCLUSIONS: These phylogenetic results do not agree with any previous classifications of the genus. Molecular data also suggest that the endemic Macaronesian species B. salicifolium is a neoendemic, as the sequence divergence between the populations in Madeira and Canary Islands, and closer mainland relatives in north-west Africa is small. All endemic north-west African taxa are included in a single unresolved but well-supported clade, and the low nucleotide variation of ITS suggests a recent radiation within this group. The only southern hemisphere species, B. mundii (southern Africa), is shown to be a neoendemic, apparently closely related to B. falcatum, a Eurasian species.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 14980972      PMCID: PMC4242331          DOI: 10.1093/aob/mch052

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  24 in total

1.  Ribosomal DNA evidence and disjunctions of western American Portulacaceae.

Authors:  M A Hershkovitz; E A Zimmer
Journal:  Mol Phylogenet Evol       Date:  2000-06       Impact factor: 4.286

2.  A phylogeny of Apiaceae tribe Scandiceae: evidence from nuclear ribosomal DNA internal transcribed spacer sequences.

Authors:  S R Downie; D S Katz-Downie; K Spalik
Journal:  Am J Bot       Date:  2000-01       Impact factor: 3.844

3.  Evolution and alignment of the hypervariable arm 1 of Aeschynanthus (Gesneriaceae) ITS2 nuclear ribosomal DNA.

Authors:  J Denduangboripant; Q C Cronk
Journal:  Mol Phylogenet Evol       Date:  2001-08       Impact factor: 4.286

4.  Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae.

Authors:  B G Baldwin
Journal:  Mol Phylogenet Evol       Date:  1992-03       Impact factor: 4.286

5.  Evidence for biased gene conversion in concerted evolution of ribosomal DNA.

Authors:  D M Hillis; C Moritz; C A Porter; R J Baker
Journal:  Science       Date:  1991-01-18       Impact factor: 47.728

6.  Clarification of the relationship beteen Apiaceae and Araliaceae based on matK and rbcL sequence data.

Authors:  G Plunkett; D Soltis; P Soltis
Journal:  Am J Bot       Date:  1997-04       Impact factor: 3.844

7.  Nucleotide sequences of the 5.8S rRNA gene and internal transcribed spacer regions in carrot and broad bean ribosomal DNA.

Authors:  Y Yokota; T Kawata; Y Iida; A Kato; S Tanifuji
Journal:  J Mol Evol       Date:  1989-10       Impact factor: 2.395

8.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

9.  Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.

Authors:  Z Yang
Journal:  Mol Biol Evol       Date:  1993-11       Impact factor: 16.240

10.  Molecular systematics of Apiaceae subfamily Apioideae: phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer and plastid RPO C1 intron sequences.

Authors:  S Downie; S Ramanath; D Katz-Downie; E Llanas
Journal:  Am J Bot       Date:  1998-04       Impact factor: 3.844

View more
  5 in total

1.  The complete mitochondrial genome sequences of Bupleurum falcatum (Apiales: Apiaceae).

Authors:  Chang-Kug Kim; Min-Woo Jin; Yong-Kab Kim
Journal:  Mitochondrial DNA B Resour       Date:  2020-06-24       Impact factor: 0.658

2.  Medicinal Plant Extracts and Natural Compounds for the Treatment of Cutaneous Lupus Erythematosus: A Systematic Review.

Authors:  Janet E Lubov; Aisha S Jamison; Becky Baltich Nelson; Alice A Amudzi; Kelly N Haas; Jillian M Richmond
Journal:  Front Pharmacol       Date:  2022-03-31       Impact factor: 5.988

3.  Chemical and Genetic Variability of Istrian Foeniculum vulgare Wild Populations.

Authors:  Mitja Križman; Jernej Jakše
Journal:  Plants (Basel)       Date:  2022-08-29

4.  Complete chloroplast genome and phylogenetic analysis of Bupleurum kaoi Liu, Chao, and Chuang, 1977: an endemic species in Taiwan.

Authors:  Chi-Chun Huang; Chao-Li Huang; Tsai-Wen Hsu; Li-Hui Chang; Kuo-Hsiang Hung; Wei-Kuang Wang
Journal:  Mitochondrial DNA B Resour       Date:  2022-08-22       Impact factor: 0.610

5.  Comparative Analysis of the Complete Plastid Genome of Five Bupleurum Species and New Insights into DNA Barcoding and Phylogenetic Relationship.

Authors:  Jun Li; Deng-Feng Xie; Xian-Lin Guo; Zhen-Ying Zheng; Xing-Jin He; Song-Dong Zhou
Journal:  Plants (Basel)       Date:  2020-04-22
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.