Literature DB >> 14962942

QDist--quartet distance between evolutionary trees.

Thomas Mailund1, Christian N S Pedersen.   

Abstract

SUMMARY: QDist is a program for computing the quartet distance between two unrooted trees, i.e. the number of quartet topology differences between the trees, where a quartet topology is the topological subtree induced by four species. The program is based on an algorithm with running time O(n log2 n), which makes it practical to compare large trees. Available under GNU license. AVAILABILITY: http://www.birc.dk/Software/QDist

Mesh：

Year:  2004        PMID： 14962942     DOI： 10.1093/bioinformatics/bth097

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  14 in total

1.  Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.

Authors:  J Gordon Burleigh; Mukul S Bansal; Oliver Eulenstein; Stefanie Hartmann; André Wehe; Todd J Vision
Journal:  Syst Biol       Date:  2010-12-24       Impact factor: 15.683

2.  Comparative evolutionary genomics of androgen-binding protein genes.

Authors:  Richard D Emes; Matthew C Riley; Christina M Laukaitis; Leo Goodstadt; Robert C Karn; Chris P Ponting
Journal:  Genome Res       Date:  2004-07-15       Impact factor: 9.043

3.  Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees.

Authors:  Alexander Keller; Frank Förster; Tobias Müller; Thomas Dandekar; Jörg Schultz; Matthias Wolf
Journal:  Biol Direct       Date:  2010-01-15       Impact factor: 4.540

4.  Non-parametric correction of estimated gene trees using TRACTION.

Authors:  Sarah Christensen; Erin K Molloy; Pranjal Vachaspati; Ananya Yammanuru; Tandy Warnow
Journal:  Algorithms Mol Biol       Date:  2020-01-04       Impact factor: 1.405

5.  OCTAL: Optimal Completion of gene trees in polynomial time.

Authors:  Sarah Christensen; Erin K Molloy; Pranjal Vachaspati; Tandy Warnow
Journal:  Algorithms Mol Biol       Date:  2018-03-15       Impact factor: 1.405

6.  A practical O(n log2 n) time algorithm for computing the triplet distance on binary trees.

Authors:  Andreas Sand; Gerth Stølting Brodal; Rolf Fagerberg; Christian N S Pedersen; Thomas Mailund
Journal:  BMC Bioinformatics       Date:  2013-01-21       Impact factor: 3.169

7.  Evolutionary distances in the twilight zone--a rational kernel approach.

Authors:  Roland F Schwarz; William Fletcher; Frank Förster; Benjamin Merget; Matthias Wolf; Jörg Schultz; Florian Markowetz
Journal:  PLoS One       Date:  2010-12-31       Impact factor: 3.240

8.  Cultural phylogenetics of the Tupi language family in lowland South America.

Authors:  Robert S Walker; Søren Wichmann; Thomas Mailund; Curtis J Atkisson
Journal:  PLoS One       Date:  2012-04-10       Impact factor: 3.240

9.  Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms.

Authors:  J Gordon Burleigh; Khidir W Hilu; Douglas E Soltis
Journal:  BMC Evol Biol       Date:  2009-03-17       Impact factor: 3.260

10.  Pattern-based phylogenetic distance estimation and tree reconstruction.

Authors:  Michael Höhl; Isidore Rigoutsos; Mark A Ragan
Journal:  Evol Bioinform Online       Date:  2007-02-25       Impact factor: 1.625
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